Hb_000164_110

Information

Type transcription factor
Description TF Family: C2H2
Location Contig164: 88352-89929
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13480g
description POPTRDRAFT_569056; zinc finger family protein
nr
ID XP_006370600.1
description hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GX07
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44130g PE=4 SV=1
Gene Ontology
ID GO:0003950
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15056: 87891-90220 , PASA_asmbl_15059: 76228-89320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_110 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
2 Hb_006970_120 0.0781760983 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000380_140 0.1005781713 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
4 Hb_004946_010 0.1084218736 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
5 Hb_002122_070 0.1092926808 - - unnamed protein product [Vitis vinifera]
6 Hb_000901_010 0.1188932709 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
7 Hb_000147_020 0.1204317309 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
8 Hb_006053_020 0.1219595338 - - CAP [Theobroma cacao]
9 Hb_000072_110 0.1239694839 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
10 Hb_000675_010 0.1241943942 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
11 Hb_124579_020 0.1242732308 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
12 Hb_185474_020 0.1255471718 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_024570_030 0.1276292256 - - cytochrome P450, putative [Ricinus communis]
14 Hb_003141_060 0.1281558958 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
15 Hb_067558_010 0.129100044 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_039435_020 0.1295484561 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
17 Hb_000042_090 0.1295776699 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
18 Hb_002701_060 0.1315653333 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000705_040 0.1332925365 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000041_250 0.1334898724 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_110 Hb_000164_110 Hb_006970_120 Hb_006970_120 Hb_000164_110--Hb_006970_120 Hb_000380_140 Hb_000380_140 Hb_000164_110--Hb_000380_140 Hb_004946_010 Hb_004946_010 Hb_000164_110--Hb_004946_010 Hb_002122_070 Hb_002122_070 Hb_000164_110--Hb_002122_070 Hb_000901_010 Hb_000901_010 Hb_000164_110--Hb_000901_010 Hb_000147_020 Hb_000147_020 Hb_000164_110--Hb_000147_020 Hb_006970_120--Hb_000380_140 Hb_006970_120--Hb_000147_020 Hb_006970_120--Hb_004946_010 Hb_002701_060 Hb_002701_060 Hb_006970_120--Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_006970_120--Hb_006053_020 Hb_002635_010 Hb_002635_010 Hb_000380_140--Hb_002635_010 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_000380_140--Hb_004946_010 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_000380_140--Hb_124579_020 Hb_004946_010--Hb_000901_010 Hb_000483_430 Hb_000483_430 Hb_004946_010--Hb_000483_430 Hb_000987_020 Hb_000987_020 Hb_004946_010--Hb_000987_020 Hb_000023_130 Hb_000023_130 Hb_004946_010--Hb_000023_130 Hb_039435_020 Hb_039435_020 Hb_002122_070--Hb_039435_020 Hb_114893_010 Hb_114893_010 Hb_002122_070--Hb_114893_010 Hb_002122_070--Hb_006053_020 Hb_002122_070--Hb_185474_020 Hb_001300_240 Hb_001300_240 Hb_002122_070--Hb_001300_240 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_002078_320 Hb_002078_320 Hb_000901_010--Hb_002078_320 Hb_000901_010--Hb_000987_020 Hb_020805_070 Hb_020805_070 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750 Hb_000500_360 Hb_000500_360 Hb_000147_020--Hb_000500_360 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000147_020--Hb_000260_750 Hb_000640_330 Hb_000640_330 Hb_000147_020--Hb_000640_330 Hb_000147_020--Hb_000380_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.350682 1.64635 0.923436 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037332 0.0587348 0 0.904725 2.80622

CAGE analysis