Hb_000380_140

Information

Type -
Description -
Location Contig380: 151602-157446
Sequence    

Annotation

kegg
ID rcu:RCOM_0033580
description protein binding protein, putative
nr
ID XP_012064779.1
description PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID B9SVA9
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0033580 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38568: 151589-157392 , PASA_asmbl_38569: 151843-157392 , PASA_asmbl_38570: 154511-154893
cDNA
(Sanger)
(ID:Location)		 040_N11.ab1: 151591-155105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_140 0.0 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
2 Hb_006970_120 0.0680839953 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002635_010 0.0722536836 - - homogentisate phytyl transferase [Hevea brasiliensis]
4 Hb_010311_020 0.0761266661 - - lrr receptor protein kinase, putative [Ricinus communis]
5 Hb_004946_010 0.0808870142 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
6 Hb_185474_020 0.0817440064 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_124579_020 0.0952004868 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
8 Hb_000164_110 0.1005781713 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
9 Hb_006198_040 0.1028820669 - - conserved hypothetical protein [Ricinus communis]
10 Hb_020805_070 0.107153701 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
11 Hb_000130_480 0.1102738168 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
12 Hb_170023_010 0.1110997947 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
13 Hb_006053_020 0.1114659311 - - CAP [Theobroma cacao]
14 Hb_000901_010 0.1118768862 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
15 Hb_000147_020 0.1141302722 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
16 Hb_007850_110 0.1158990529 - - MADS-box transcription factor 3 [Hevea brasiliensis]
17 Hb_004324_320 0.1168337747 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
18 Hb_001405_040 0.1171636404 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
19 Hb_003142_080 0.1190323018 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_000416_010 0.1196333133 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_140 Hb_000380_140 Hb_006970_120 Hb_006970_120 Hb_000380_140--Hb_006970_120 Hb_002635_010 Hb_002635_010 Hb_000380_140--Hb_002635_010 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_004946_010 Hb_004946_010 Hb_000380_140--Hb_004946_010 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_000380_140--Hb_124579_020 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_006970_120--Hb_000147_020 Hb_006970_120--Hb_004946_010 Hb_002701_060 Hb_002701_060 Hb_006970_120--Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_006970_120--Hb_006053_020 Hb_000130_480 Hb_000130_480 Hb_002635_010--Hb_000130_480 Hb_004607_160 Hb_004607_160 Hb_002635_010--Hb_004607_160 Hb_002635_010--Hb_124579_020 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110 Hb_003142_080 Hb_003142_080 Hb_002635_010--Hb_003142_080 Hb_000416_010 Hb_000416_010 Hb_010311_020--Hb_000416_010 Hb_010311_020--Hb_124579_020 Hb_010311_020--Hb_185474_020 Hb_010311_020--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_010311_020--Hb_006198_040 Hb_000901_010 Hb_000901_010 Hb_004946_010--Hb_000901_010 Hb_000483_430 Hb_000483_430 Hb_004946_010--Hb_000483_430 Hb_000987_020 Hb_000987_020 Hb_004946_010--Hb_000987_020 Hb_000023_130 Hb_000023_130 Hb_004946_010--Hb_000023_130 Hb_185474_020--Hb_003142_080 Hb_185474_020--Hb_006198_040 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_185474_020--Hb_124579_020 Hb_124579_020--Hb_000130_480 Hb_124579_020--Hb_000416_010 Hb_124579_020--Hb_003142_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00634308 8.07528 30.9302 25.1581 0.0122846 0.0172942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0143832 0.022637 0 23.5359 56.5174

CAGE analysis