Hb_000987_020

Information

Type -
Description -
Location Contig987: 7278-10703
Sequence    

Annotation

kegg
ID rcu:RCOM_0847860
description hypothetical protein
nr
ID XP_012089780.1
description PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
swissprot
ID Q8RXQ1
description Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1
trembl
ID A0A067JG67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00419 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64656: 7329-10225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_020 0.0 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
2 Hb_001579_060 0.0710525263 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_002078_320 0.0729763098 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
4 Hb_000901_010 0.074627035 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
5 Hb_000185_170 0.0815109884 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000694_050 0.0849779486 - - Nuclease PA3, putative [Ricinus communis]
7 Hb_000037_200 0.088556211 - - RNA binding protein, putative [Ricinus communis]
8 Hb_004946_010 0.0915554424 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
9 Hb_032695_010 0.0956114655 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
10 Hb_002601_140 0.0957735683 - - signal transducer, putative [Ricinus communis]
11 Hb_078582_010 0.0965174622 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
12 Hb_002030_090 0.1044391072 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_001883_010 0.1065448662 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_000062_050 0.1067412377 - - protein binding protein, putative [Ricinus communis]
15 Hb_000260_750 0.1086158237 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_000023_130 0.1103290109 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
17 Hb_006827_030 0.111028366 - - oligopeptide transporter, putative [Ricinus communis]
18 Hb_070136_010 0.1114572532 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_000010_370 0.1156501877 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
20 Hb_093364_010 0.1189467456 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]

Gene co-expression network

sample Hb_000987_020 Hb_000987_020 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_002078_320 Hb_002078_320 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000185_170 Hb_000185_170 Hb_000987_020--Hb_000185_170 Hb_000694_050 Hb_000694_050 Hb_000987_020--Hb_000694_050 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_001579_060--Hb_000694_050 Hb_001883_010 Hb_001883_010 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_003506_010 Hb_003506_010 Hb_002078_320--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_002078_320--Hb_004162_320 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000185_170 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_004946_010 Hb_004946_010 Hb_000901_010--Hb_004946_010 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000185_170--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_000694_050--Hb_001883_010 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_000694_050--Hb_002078_320 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.84515 6.76927 3.50753 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0228671 0 2.82723 7.194

CAGE analysis