Hb_000968_010

Information

Type -
Description -
Location Contig968: 11783-17348
Sequence    

Annotation

kegg
ID rcu:RCOM_0487570
description glutamate receptor 3 plant, putative
nr
ID XP_012086329.1
description PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SDQ4
description Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2
trembl
ID A0A067JPN4
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_22867 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63917: 11629-17050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000968_010 0.0 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
2 Hb_000270_640 0.0842916181 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
3 Hb_003141_060 0.0853533283 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
4 Hb_011104_020 0.0900983592 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
5 Hb_000680_130 0.0944873383 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_001579_060 0.0948239993 - - carbonic anhydrase, putative [Ricinus communis]
7 Hb_000373_010 0.0950545629 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002073_150 0.0959014404 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
9 Hb_001248_070 0.0959285336 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
10 Hb_000705_040 0.0980686836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000608_290 0.1019079114 - - thioredoxin f-type, putative [Ricinus communis]
12 Hb_000483_430 0.1024368801 - - -
13 Hb_000140_460 0.1060602697 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
14 Hb_002155_020 0.1078752145 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
15 Hb_007718_030 0.1104112054 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_001051_010 0.1110033204 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
17 Hb_000002_300 0.1120031576 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
18 Hb_002407_090 0.1131134188 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
19 Hb_069696_020 0.1162818495 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
20 Hb_004946_010 0.1164155168 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000968_010 Hb_000968_010 Hb_000270_640 Hb_000270_640 Hb_000968_010--Hb_000270_640 Hb_003141_060 Hb_003141_060 Hb_000968_010--Hb_003141_060 Hb_011104_020 Hb_011104_020 Hb_000968_010--Hb_011104_020 Hb_000680_130 Hb_000680_130 Hb_000968_010--Hb_000680_130 Hb_001579_060 Hb_001579_060 Hb_000968_010--Hb_001579_060 Hb_000373_010 Hb_000373_010 Hb_000968_010--Hb_000373_010 Hb_000705_040 Hb_000705_040 Hb_000270_640--Hb_000705_040 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_001227_140 Hb_001227_140 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120 Hb_002073_150 Hb_002073_150 Hb_011104_020--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_011104_020--Hb_000483_430 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_011104_020--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_011104_020--Hb_004994_030 Hb_012389_010 Hb_012389_010 Hb_011104_020--Hb_012389_010 Hb_000680_130--Hb_000373_010 Hb_000680_130--Hb_000705_040 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_000680_130--Hb_002636_070 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_000680_130--Hb_001579_060 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_000987_020 Hb_000987_020 Hb_001579_060--Hb_000987_020 Hb_001883_010 Hb_001883_010 Hb_001579_060--Hb_001883_010 Hb_011028_030 Hb_011028_030 Hb_000373_010--Hb_011028_030 Hb_000373_010--Hb_002155_020 Hb_000644_010 Hb_000644_010 Hb_000373_010--Hb_000644_010 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_096224_050 Hb_096224_050 Hb_000373_010--Hb_096224_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0213517 6.59025 16.6479 8.44557 0.141361 0.149785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102781 0.143795 0.172496 4.48252 27.2518

CAGE analysis