Hb_012389_010

Information

Type -
Description -
Location Contig12389: 13673-17132
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11820g
description POPTRDRAFT_578767; hypothetical protein
nr
ID XP_002325142.1
description hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
swissprot
ID P93338
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1
trembl
ID A9PEY4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11820g PE=2 SV=1
Gene Ontology
ID GO:0008886
description nadp-dependent glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07233: 13856-17042 , PASA_asmbl_07234: 13856-17392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012389_010 0.0 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
2 Hb_002073_150 0.0492835469 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_000041_210 0.0554123259 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
4 Hb_004994_030 0.0660559647 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
5 Hb_011104_020 0.0683530853 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
6 Hb_131876_010 0.0684814825 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
7 Hb_000675_010 0.068716788 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
8 Hb_000483_430 0.0701084244 - - -
9 Hb_000239_050 0.0822467125 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
10 Hb_000984_160 0.0849833811 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
11 Hb_069696_020 0.0869257773 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
12 Hb_004970_060 0.0889017647 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
13 Hb_000140_460 0.0895189075 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
14 Hb_001248_070 0.0900177472 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
15 Hb_000270_090 0.0928358664 - - nitrate transporter, putative [Ricinus communis]
16 Hb_001321_010 0.0933027665 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
17 Hb_006970_030 0.0984355806 - - synaptotagmin, putative [Ricinus communis]
18 Hb_011214_130 0.0999124502 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
19 Hb_127263_010 0.1002255847 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
20 Hb_153258_040 0.1015643807 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012389_010 Hb_012389_010 Hb_002073_150 Hb_002073_150 Hb_012389_010--Hb_002073_150 Hb_000041_210 Hb_000041_210 Hb_012389_010--Hb_000041_210 Hb_004994_030 Hb_004994_030 Hb_012389_010--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_012389_010--Hb_011104_020 Hb_131876_010 Hb_131876_010 Hb_012389_010--Hb_131876_010 Hb_000675_010 Hb_000675_010 Hb_012389_010--Hb_000675_010 Hb_002073_150--Hb_011104_020 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_067558_010 Hb_067558_010 Hb_000041_210--Hb_067558_010 Hb_000041_210--Hb_000675_010 Hb_000041_210--Hb_131876_010 Hb_000239_050 Hb_000239_050 Hb_000041_210--Hb_000239_050 Hb_000041_210--Hb_000483_430 Hb_000270_090 Hb_000270_090 Hb_004994_030--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_004994_030--Hb_001321_010 Hb_003937_010 Hb_003937_010 Hb_004994_030--Hb_003937_010 Hb_004994_030--Hb_011104_020 Hb_004994_030--Hb_002073_150 Hb_011104_020--Hb_000483_430 Hb_011104_020--Hb_001321_010 Hb_011104_020--Hb_000270_090 Hb_131876_010--Hb_069696_020 Hb_000984_160 Hb_000984_160 Hb_131876_010--Hb_000984_160 Hb_000627_050 Hb_000627_050 Hb_131876_010--Hb_000627_050 Hb_002943_020 Hb_002943_020 Hb_000675_010--Hb_002943_020 Hb_000675_010--Hb_002073_150 Hb_000675_010--Hb_000483_430 Hb_000675_010--Hb_131876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0989648 22.4309 156.255 84.8837 0.00930146 0.0825634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24839 0.0355346 0 27.2779 237.192

CAGE analysis