Hb_002943_020

Information

Type -
Description -
Location Contig2943: 52034-53526
Sequence    

Annotation

kegg
ID pop:POPTR_0075s00240g
description hypothetical protein
nr
ID XP_006388919.1
description hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7E1S6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0075s00240g PE=4 SV=1
Gene Ontology
ID GO:0016772
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30824: 51398-52115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002943_020 0.0 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
2 Hb_000705_040 0.0743486252 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000675_010 0.0834997753 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
4 Hb_000270_640 0.0982228918 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
5 Hb_004979_070 0.09900309 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
6 Hb_002073_150 0.1019808915 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_007904_110 0.1047857338 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
8 Hb_185474_020 0.1048856173 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_000011_440 0.1052933461 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
10 Hb_000644_010 0.1061400047 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_001652_130 0.1071688501 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
12 Hb_048755_030 0.1084755465 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_011104_020 0.1086904984 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
14 Hb_000483_440 0.1114796034 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000482_180 0.1116125242 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
16 Hb_003195_080 0.1129646439 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
17 Hb_096224_050 0.1138911525 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
18 Hb_004291_050 0.1147547823 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
19 Hb_002111_010 0.1151563053 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_012389_010 0.1161100681 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]

Gene co-expression network

sample Hb_002943_020 Hb_002943_020 Hb_000705_040 Hb_000705_040 Hb_002943_020--Hb_000705_040 Hb_000675_010 Hb_000675_010 Hb_002943_020--Hb_000675_010 Hb_000270_640 Hb_000270_640 Hb_002943_020--Hb_000270_640 Hb_004979_070 Hb_004979_070 Hb_002943_020--Hb_004979_070 Hb_002073_150 Hb_002073_150 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110 Hb_000705_040--Hb_000270_640 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_000680_130 Hb_000680_130 Hb_000705_040--Hb_000680_130 Hb_000705_040--Hb_002073_150 Hb_029223_010 Hb_029223_010 Hb_000705_040--Hb_029223_010 Hb_000041_210 Hb_000041_210 Hb_000675_010--Hb_000041_210 Hb_012389_010 Hb_012389_010 Hb_000675_010--Hb_012389_010 Hb_000675_010--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_000675_010--Hb_000483_430 Hb_131876_010 Hb_131876_010 Hb_000675_010--Hb_131876_010 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_000270_640--Hb_004979_070 Hb_004979_070--Hb_007904_110 Hb_096224_050 Hb_096224_050 Hb_004979_070--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_004979_070--Hb_004979_080 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_011104_020 Hb_011104_020 Hb_002073_150--Hb_011104_020 Hb_002073_150--Hb_012389_010 Hb_002073_150--Hb_001248_070 Hb_002073_150--Hb_131876_010 Hb_002073_150--Hb_000483_430 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118498 0.349338 0.262654 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12459 0.952745

CAGE analysis