Hb_004979_070

Information

Type -
Description -
Location Contig4979: 54336-55878
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02300g
description hypothetical protein
nr
ID KEH40304.1
description wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072VE61
description Uncharacterized protein OS=Medicago truncatula GN=MTR_1g026950 PE=4 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase galacturonan-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45589: 54308-57918 , PASA_asmbl_45593: 54297-76706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004979_070 0.0 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
2 Hb_007904_110 0.0303634974 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
3 Hb_096224_050 0.059252212 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
4 Hb_004979_080 0.0753218105 - - kinase, putative [Ricinus communis]
5 Hb_025557_060 0.0759445163 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
6 Hb_119600_030 0.0825734077 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
7 Hb_004291_050 0.0891041584 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
8 Hb_005305_070 0.0901466736 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
9 Hb_000482_180 0.0905624649 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
10 Hb_000270_640 0.0923235869 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
11 Hb_000644_010 0.0976192301 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
12 Hb_020367_040 0.0989562099 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
13 Hb_002943_020 0.09900309 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
14 Hb_002226_090 0.09942766 - - Stachyose synthase precursor, putative [Ricinus communis]
15 Hb_002701_250 0.0998776968 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_005111_040 0.1001770051 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_004835_020 0.1039120822 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_033363_030 0.1042627994 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
19 Hb_000373_010 0.105188223 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003125_090 0.1053056773 - - -

Gene co-expression network

sample Hb_004979_070 Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_004979_070--Hb_007904_110 Hb_096224_050 Hb_096224_050 Hb_004979_070--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_004979_070--Hb_004979_080 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_096224_050--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_025557_060--Hb_096224_050 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_025557_060--Hb_119600_030 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250 Hb_004291_050--Hb_004979_080 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_004291_050--Hb_007904_110 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0762511 12.1115 25.7747 21.8832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0422768 0 3.3873 72.0516

CAGE analysis