Hb_000027_110

Information

Type -
Description -
Location Contig27: 169048-185020
Sequence    

Annotation

kegg
ID rcu:RCOM_1310660
description wall-associated kinase, putative (EC:2.7.10.2)
nr
ID XP_002527017.1
description wall-associated kinase, putative [Ricinus communis]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID B9SLZ8
description Wall-associated kinase, putative OS=Ricinus communis GN=RCOM_1310660 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g18390 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28124: 183544-184047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_110 0.0 - - wall-associated kinase, putative [Ricinus communis]
2 Hb_096224_050 0.0684354474 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
3 Hb_000644_010 0.0748396811 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
4 Hb_033363_030 0.0775308851 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
5 Hb_000668_180 0.0814272471 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
6 Hb_000116_090 0.0889629148 - - catalase [Hevea brasiliensis]
7 Hb_005305_070 0.0898070325 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
8 Hb_007904_110 0.0927098866 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
9 Hb_004979_080 0.092820048 - - kinase, putative [Ricinus communis]
10 Hb_003299_060 0.0993448212 - - nitrate transporter, putative [Ricinus communis]
11 Hb_003643_080 0.1008205432 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_186844_010 0.1034981172 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_015824_010 0.1041733098 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_004979_070 0.1077639448 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
15 Hb_001699_140 0.1113710714 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_046739_010 0.1117002094 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
17 Hb_031069_040 0.1144358351 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000081_110 0.1149377212 - - nitrate transporter, putative [Ricinus communis]
19 Hb_004291_050 0.1154187876 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
20 Hb_011028_030 0.1176098173 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000027_110 Hb_000027_110 Hb_096224_050 Hb_096224_050 Hb_000027_110--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_000027_110--Hb_000644_010 Hb_033363_030 Hb_033363_030 Hb_000027_110--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_007904_110 Hb_007904_110 Hb_096224_050--Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_096224_050--Hb_004979_070 Hb_096224_050--Hb_000644_010 Hb_004979_080 Hb_004979_080 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_033363_030 Hb_003643_080 Hb_003643_080 Hb_000644_010--Hb_003643_080 Hb_000373_010 Hb_000373_010 Hb_000644_010--Hb_000373_010 Hb_000644_010--Hb_004979_080 Hb_002155_020 Hb_002155_020 Hb_000644_010--Hb_002155_020 Hb_033363_030--Hb_004979_080 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_000668_180--Hb_004979_080 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040 Hb_000307_150 Hb_000307_150 Hb_000116_090--Hb_000307_150 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_007477_060 Hb_007477_060 Hb_000116_090--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_005305_070--Hb_001699_140 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.15375 2.21962 0.877114 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201738 0 0 0.233455 5.38273

CAGE analysis