Hb_031069_040

Information

Type -
Description -
Location Contig31069: 52497-56902
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031069_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000373_160 0.0796783206 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
3 Hb_001269_030 0.0824043104 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
4 Hb_000116_090 0.0981110233 - - catalase [Hevea brasiliensis]
5 Hb_005337_140 0.099132066 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
6 Hb_000668_180 0.1015049233 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
7 Hb_000307_150 0.1021356301 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
8 Hb_000334_010 0.1050921913 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_033363_030 0.1059424371 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
10 Hb_002421_150 0.1135539686 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
11 Hb_000027_110 0.1144358351 - - wall-associated kinase, putative [Ricinus communis]
12 Hb_003209_150 0.1191211399 - - CLE9, putative [Ricinus communis]
13 Hb_002400_260 0.1196172522 - - catalytic, putative [Ricinus communis]
14 Hb_001892_080 0.1197576295 - - Clavata3/esr-related 16, putative [Theobroma cacao]
15 Hb_002701_250 0.1211716853 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_000826_010 0.1224510625 - - conserved hypothetical protein [Ricinus communis]
17 Hb_096224_050 0.1238566964 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
18 Hb_119600_030 0.1294924069 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
19 Hb_001699_140 0.129918908 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
20 Hb_002842_010 0.1299865655 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_031069_040 Hb_031069_040 Hb_000373_160 Hb_000373_160 Hb_031069_040--Hb_000373_160 Hb_001269_030 Hb_001269_030 Hb_031069_040--Hb_001269_030 Hb_000116_090 Hb_000116_090 Hb_031069_040--Hb_000116_090 Hb_005337_140 Hb_005337_140 Hb_031069_040--Hb_005337_140 Hb_000668_180 Hb_000668_180 Hb_031069_040--Hb_000668_180 Hb_000307_150 Hb_000307_150 Hb_031069_040--Hb_000307_150 Hb_005054_120 Hb_005054_120 Hb_000373_160--Hb_005054_120 Hb_002701_250 Hb_002701_250 Hb_000373_160--Hb_002701_250 Hb_000826_010 Hb_000826_010 Hb_000373_160--Hb_000826_010 Hb_000373_160--Hb_001269_030 Hb_002421_150 Hb_002421_150 Hb_000373_160--Hb_002421_150 Hb_000545_180 Hb_000545_180 Hb_001269_030--Hb_000545_180 Hb_001892_080 Hb_001892_080 Hb_001269_030--Hb_001892_080 Hb_009771_090 Hb_009771_090 Hb_001269_030--Hb_009771_090 Hb_001269_030--Hb_000826_010 Hb_001028_040 Hb_001028_040 Hb_001269_030--Hb_001028_040 Hb_000116_090--Hb_000307_150 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_007477_060 Hb_007477_060 Hb_000116_090--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_002307_120 Hb_002307_120 Hb_005337_140--Hb_002307_120 Hb_003209_150 Hb_003209_150 Hb_005337_140--Hb_003209_150 Hb_033363_030 Hb_033363_030 Hb_005337_140--Hb_033363_030 Hb_006243_010 Hb_006243_010 Hb_005337_140--Hb_006243_010 Hb_003654_020 Hb_003654_020 Hb_005337_140--Hb_003654_020 Hb_000668_180--Hb_033363_030 Hb_000027_110 Hb_000027_110 Hb_000668_180--Hb_000027_110 Hb_004979_080 Hb_004979_080 Hb_000668_180--Hb_004979_080 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_000307_150--Hb_001892_080 Hb_000307_150--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_000307_150--Hb_000334_010 Hb_000307_150--Hb_001269_030 Hb_000307_150--Hb_007477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00388957 0.00736256 0.00323654 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0180796

CAGE analysis