Hb_000116_090

Information

Type -
Description -
Location Contig116: 98223-101582
Sequence    

Annotation

kegg
ID vvi:100244516
description catalase isozyme 1
nr
ID ADU56199.1
description catalase [Hevea brasiliensis]
swissprot
ID P25819
description Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=2 SV=3
trembl
ID E9NM58
description Catalase OS=Hevea brasiliensis GN=cat PE=2 SV=1
Gene Ontology
ID GO:0005634
description catalase isozyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04814: 98410-101606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_090 0.0 - - catalase [Hevea brasiliensis]
2 Hb_000307_150 0.0577509628 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
3 Hb_001699_140 0.0776141889 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
4 Hb_003536_020 0.0792696716 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
5 Hb_007477_060 0.082590986 - - unknown [Medicago truncatula]
6 Hb_002871_180 0.0830767344 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
7 Hb_000101_330 0.088021863 - - -
8 Hb_000027_110 0.0889629148 - - wall-associated kinase, putative [Ricinus communis]
9 Hb_005305_070 0.0922300816 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
10 Hb_001892_080 0.0955828751 - - Clavata3/esr-related 16, putative [Theobroma cacao]
11 Hb_005433_020 0.0967557398 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
12 Hb_001604_100 0.0980615225 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
13 Hb_031069_040 0.0981110233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000334_010 0.0988234911 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_001269_030 0.0995571186 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
16 Hb_000373_160 0.1008403342 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_080922_010 0.1013376396 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000460_040 0.1028467654 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
19 Hb_002010_030 0.1044832555 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
20 Hb_006570_030 0.1047528089 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000116_090 Hb_000116_090 Hb_000307_150 Hb_000307_150 Hb_000116_090--Hb_000307_150 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_007477_060 Hb_007477_060 Hb_000116_090--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_001892_080 Hb_001892_080 Hb_000307_150--Hb_001892_080 Hb_000307_150--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_000307_150--Hb_000334_010 Hb_001269_030 Hb_001269_030 Hb_000307_150--Hb_001269_030 Hb_000307_150--Hb_007477_060 Hb_001699_140--Hb_000101_330 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_080922_010 Hb_080922_010 Hb_003536_020--Hb_080922_010 Hb_003536_020--Hb_007477_060 Hb_003536_020--Hb_000101_330 Hb_003536_020--Hb_001699_140 Hb_003536_020--Hb_002871_180 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_002871_180 Hb_006570_030 Hb_006570_030 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0903703 34.8126 112.49 31.771 0.0618006 0.166559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318227 0.133544 0 3.04675 217.414

CAGE analysis