Hb_002368_060

Information

Type -
Description -
Location Contig2368: 103606-104988
Sequence    

Annotation

kegg
ID rcu:RCOM_0629280
description hypothetical protein
nr
ID XP_002527791.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAC5
description NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana GN=ndhL PE=2 SV=1
trembl
ID B9SP72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1
Gene Ontology
ID GO:0016655
description inorganic carbon transport isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24769: 103625-104874
cDNA
(Sanger)
(ID:Location)		 030_M10.ab1: 103680-104874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001028_040 0.0234356749 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
3 Hb_006570_030 0.034704625 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
4 Hb_000139_310 0.0444322366 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
5 Hb_002785_030 0.052180066 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
6 Hb_001322_120 0.0612417457 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_001292_030 0.0612590109 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
8 Hb_000101_330 0.0631654201 - - -
9 Hb_001416_130 0.0655226693 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001006_040 0.0657869002 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
11 Hb_005063_030 0.0661235975 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_007477_060 0.0698262592 - - unknown [Medicago truncatula]
13 Hb_000088_230 0.0708237475 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
14 Hb_001892_080 0.0713685008 - - Clavata3/esr-related 16, putative [Theobroma cacao]
15 Hb_001975_100 0.0716303628 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
16 Hb_000589_340 0.0734604646 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_000077_380 0.0746154241 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_002871_180 0.0750458854 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
19 Hb_000460_040 0.0759675158 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
20 Hb_000545_180 0.076341122 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002368_060 Hb_002368_060 Hb_001028_040 Hb_001028_040 Hb_002368_060--Hb_001028_040 Hb_006570_030 Hb_006570_030 Hb_002368_060--Hb_006570_030 Hb_000139_310 Hb_000139_310 Hb_002368_060--Hb_000139_310 Hb_002785_030 Hb_002785_030 Hb_002368_060--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_002368_060--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_002368_060--Hb_001292_030 Hb_001028_040--Hb_006570_030 Hb_001028_040--Hb_000139_310 Hb_001028_040--Hb_002785_030 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_000139_310--Hb_001416_130 Hb_000589_340 Hb_000589_340 Hb_000139_310--Hb_000589_340 Hb_000139_310--Hb_001292_030 Hb_001006_040 Hb_001006_040 Hb_002785_030--Hb_001006_040 Hb_002785_030--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_002785_030--Hb_002529_120 Hb_002785_030--Hb_001322_120 Hb_001322_120--Hb_001292_030 Hb_001322_120--Hb_002529_120 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_001292_030--Hb_001006_040 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.42667 41.9198 16.5829 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0552148 0.0434233 0 0 73.4414

CAGE analysis