Hb_001006_040

Information

Type -
Description -
Location Contig1006: 55860-57680
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14240g
description POPTRDRAFT_564741; hypothetical protein
nr
ID XP_011021681.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
swissprot
ID Q66GP4
description Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1
trembl
ID B9HJN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14240g PE=4 SV=2
Gene Ontology
ID GO:0009658
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00386: 55973-56329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
2 Hb_002785_030 0.0324693433 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
3 Hb_001292_030 0.0347112515 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
4 Hb_001975_100 0.0467242527 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
5 Hb_001322_120 0.0478491187 - - nutrient reservoir, putative [Ricinus communis]
6 Hb_005063_030 0.0579385106 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_001028_040 0.0602011399 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
8 Hb_006570_030 0.0606865056 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_146225_020 0.0610493161 - - chlorophyll A/B binding protein, putative [Ricinus communis]
10 Hb_002272_210 0.0613173504 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
11 Hb_002529_120 0.062287445 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
12 Hb_003623_080 0.0642045977 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
13 Hb_000230_420 0.0648586784 - - GS [Hevea brasiliensis subsp. brasiliensis]
14 Hb_002368_060 0.0657869002 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000531_100 0.0659976228 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
16 Hb_002752_020 0.0670646628 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
17 Hb_001277_350 0.0694778964 - - early light-induced protein, putative [Ricinus communis]
18 Hb_002375_030 0.0695009772 - - F-box family protein [Populus trichocarpa]
19 Hb_000254_130 0.0696131633 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
20 Hb_008225_050 0.0711071228 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]

Gene co-expression network

sample Hb_001006_040 Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001292_030 Hb_001292_030 Hb_001006_040--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_001006_040--Hb_001975_100 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_002785_030--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_002785_030--Hb_002529_120 Hb_002785_030--Hb_001322_120 Hb_002785_030--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_002785_030--Hb_002368_060 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001292_030--Hb_001975_100 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_002529_120 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_005063_030--Hb_001564_120 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_001028_040--Hb_002368_060 Hb_001028_040--Hb_006570_030 Hb_000139_310 Hb_000139_310 Hb_001028_040--Hb_000139_310 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220345 3.30836 38.9957 16.7327 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.133459 57.9503

CAGE analysis