Hb_000254_130

Information

Type -
Description -
Location Contig254: 160277-161499
Sequence    

Annotation

kegg
ID rcu:RCOM_1493780
description Photosystem I reaction center subunit VI, chloroplast precursor, putative
nr
ID XP_002516025.1
description Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O04006
description Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris GN=PSAH PE=2 SV=1
trembl
ID B9RQK6
description Photosystem I reaction center subunit VI, chloroplast, putative OS=Ricinus communis GN=RCOM_1493780 PE=4 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit vi- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26546: 160235-161479 , PASA_asmbl_26547: 160781-161479
cDNA
(Sanger)
(ID:Location)		 008_A14.ab1: 160319-161479 , 014_D21.ab1: 160285-161479 , 014_K24.ab1: 160291-161479 , 022_A01.ab1: 160325-161479 , 026_A16.ab1: 160336-161479 , 029_F03.ab1: 160335-161472 , 029_P06.ab1: 160335-161477 , 031_I17.ab1: 160267-161479 , 035_D16.ab1: 160319-161479 , 036_N02.ab1: 160335-161479 , 037_F19.ab1: 160335-161479 , 040_A09.ab1: 160332-161444 , 040_J24r.ab1: 161967-162513 , 040_N09.ab1: 160331-161479 , 042_P04.ab1: 160344-161479 , 043_G17.ab1: 160286-161479 , 047_B02.ab1: 160291-161479 , 053_M21.ab1: 160335-161472

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_130 0.0 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
2 Hb_001975_100 0.0418622104 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
3 Hb_001999_230 0.043140119 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
4 Hb_008225_050 0.0457133419 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
5 Hb_003025_160 0.0465196387 - - Protein HVA22, putative [Ricinus communis]
6 Hb_005063_030 0.048938512 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_002752_020 0.0558861191 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
8 Hb_001007_070 0.0597790973 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_000497_050 0.0605632721 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
10 Hb_004970_060 0.0621095615 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
11 Hb_007537_040 0.0641717472 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
12 Hb_001277_350 0.065973911 - - early light-induced protein, putative [Ricinus communis]
13 Hb_000099_120 0.0661906895 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
14 Hb_004338_050 0.0663627349 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
15 Hb_003623_080 0.066996677 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
16 Hb_001564_120 0.0679643087 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
17 Hb_002259_090 0.0688448361 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
18 Hb_001006_040 0.0696131633 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
19 Hb_000049_100 0.070423475 - - Photosystem II reaction center W protein, putative [Ricinus communis]
20 Hb_001292_030 0.0723494355 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000254_130 Hb_000254_130 Hb_001975_100 Hb_001975_100 Hb_000254_130--Hb_001975_100 Hb_001999_230 Hb_001999_230 Hb_000254_130--Hb_001999_230 Hb_008225_050 Hb_008225_050 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_001975_100--Hb_005063_030 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_001975_100--Hb_001292_030 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_001975_100--Hb_008225_050 Hb_001007_070 Hb_001007_070 Hb_001999_230--Hb_001007_070 Hb_000099_120 Hb_000099_120 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001564_120 Hb_001999_230--Hb_001975_100 Hb_007537_040 Hb_007537_040 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_003025_160 Hb_008225_050--Hb_002752_020 Hb_004970_060 Hb_004970_060 Hb_008225_050--Hb_004970_060 Hb_003025_160--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_003025_160--Hb_007537_040 Hb_003025_160--Hb_001999_230 Hb_005063_030--Hb_001564_120 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230 Hb_002752_020--Hb_000497_050 Hb_146255_030 Hb_146255_030 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_001277_350 Hb_001277_350 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.433883 70.0155 712.486 416.713 1.4837 3.22267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90678 1.5708 0 13.2112 1209.03

CAGE analysis