Hb_001007_070

Information

Type -
Description -
Location Contig1007: 61226-62434
Sequence    

Annotation

kegg
ID rcu:RCOM_0559380
description thioredoxin m(mitochondrial)-type, putative (EC:5.3.4.1)
nr
ID XP_002520245.1
description thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
swissprot
ID P48384
description Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID B9S2M6
description Thioredoxin m(Mitochondrial)-type, putative OS=Ricinus communis GN=RCOM_0559380 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin m- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00455: 61301-62435 , PASA_asmbl_00456: 61311-62382
cDNA
(Sanger)
(ID:Location)		 001_G08.ab1: 61332-62359 , 014_G10.ab1: 61356-62397 , 027_D02.ab1: 61762-62382 , 032_A11.ab1: 61618-62382

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_070 0.0 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
2 Hb_001999_230 0.0375228363 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
3 Hb_000099_120 0.0464867397 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_005054_120 0.0522248549 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
5 Hb_002259_090 0.0535916729 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
6 Hb_009193_070 0.0536914055 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
7 Hb_000254_130 0.0597790973 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_001564_120 0.0601527611 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
9 Hb_008847_050 0.0642551045 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005111_040 0.0659716554 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_004338_050 0.0662185892 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
12 Hb_005063_030 0.0673924404 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_005694_120 0.0685422377 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
14 Hb_003025_160 0.0692357489 - - Protein HVA22, putative [Ricinus communis]
15 Hb_001946_120 0.0702066917 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
16 Hb_001975_100 0.0707628132 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
17 Hb_000392_470 0.0738566034 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008225_050 0.0755616689 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
19 Hb_000098_040 0.0760139668 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
20 Hb_002852_010 0.0769351482 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001007_070 Hb_001007_070 Hb_001999_230 Hb_001999_230 Hb_001007_070--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_000099_120--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000099_120--Hb_000254_130 Hb_002852_010 Hb_002852_010 Hb_005054_120--Hb_002852_010 Hb_005063_030 Hb_005063_030 Hb_005054_120--Hb_005063_030 Hb_005054_120--Hb_001564_120 Hb_005054_120--Hb_002259_090 Hb_005054_120--Hb_001999_230 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_003025_160 Hb_003025_160 Hb_002259_090--Hb_003025_160 Hb_002259_090--Hb_001999_230 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_003925_120 Hb_003925_120 Hb_009193_070--Hb_003925_120 Hb_009193_070--Hb_008847_050 Hb_028491_010 Hb_028491_010 Hb_009193_070--Hb_028491_010 Hb_006291_050 Hb_006291_050 Hb_009193_070--Hb_006291_050 Hb_009193_070--Hb_001999_230 Hb_000254_130--Hb_001975_100 Hb_008225_050 Hb_008225_050 Hb_000254_130--Hb_008225_050 Hb_000254_130--Hb_003025_160 Hb_000254_130--Hb_005063_030 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.055192 27.0255 171.691 134.28 0.068919 0.111522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29275 0.486226 0.323574 4.2931 369.423

CAGE analysis