Hb_000392_470

Information

Type -
Description -
Location Contig392: 382046-382798
Sequence    

Annotation

kegg
ID rcu:RCOM_1513730
description hypothetical protein
nr
ID XP_002511524.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID D9UBX6
description Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1
trembl
ID B9R949
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1513730 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_470 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000099_120 0.0518118514 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_001564_120 0.0624691724 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
4 Hb_004338_050 0.0683260331 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
5 Hb_001999_230 0.0704346238 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
6 Hb_001007_070 0.0738566034 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
7 Hb_000497_050 0.0778567075 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
8 Hb_005063_030 0.0789059812 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000098_040 0.0792350183 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
10 Hb_000254_130 0.0818888613 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_131466_010 0.0822471814 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
12 Hb_001975_100 0.0828380956 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
13 Hb_000395_250 0.083480965 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
14 Hb_001277_350 0.0844869278 - - early light-induced protein, putative [Ricinus communis]
15 Hb_153258_040 0.0862484897 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
16 Hb_044478_010 0.086636428 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
17 Hb_002121_050 0.0871631276 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
18 Hb_001958_060 0.0886055863 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
19 Hb_002042_210 0.0887276967 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
20 Hb_002752_020 0.0902080473 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000392_470 Hb_000392_470 Hb_000099_120 Hb_000099_120 Hb_000392_470--Hb_000099_120 Hb_001564_120 Hb_001564_120 Hb_000392_470--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000392_470--Hb_004338_050 Hb_001999_230 Hb_001999_230 Hb_000392_470--Hb_001999_230 Hb_001007_070 Hb_001007_070 Hb_000392_470--Hb_001007_070 Hb_000497_050 Hb_000497_050 Hb_000392_470--Hb_000497_050 Hb_000099_120--Hb_001007_070 Hb_000099_120--Hb_001999_230 Hb_000099_120--Hb_001564_120 Hb_000099_120--Hb_004338_050 Hb_000254_130 Hb_000254_130 Hb_000099_120--Hb_000254_130 Hb_005063_030 Hb_005063_030 Hb_001564_120--Hb_005063_030 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001999_230 Hb_001975_100 Hb_001975_100 Hb_001564_120--Hb_001975_100 Hb_001564_120--Hb_001007_070 Hb_004338_050--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_004338_050--Hb_002752_020 Hb_004338_050--Hb_001999_230 Hb_001307_050 Hb_001307_050 Hb_004338_050--Hb_001307_050 Hb_008225_050 Hb_008225_050 Hb_004338_050--Hb_008225_050 Hb_146255_030 Hb_146255_030 Hb_004338_050--Hb_146255_030 Hb_001999_230--Hb_001007_070 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001975_100 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_001007_070--Hb_000254_130 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_001307_050 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213635 2.63551 1.75327 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0884677 0 0 0.0851334 5.86533

CAGE analysis