Hb_002752_020

Information

Type -
Description -
Location Contig2752: 58687-60962
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12230g
description POPTRDRAFT_814965; FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein
nr
ID XP_002297914.2
description FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
swissprot
ID Q9SCY2
description Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic OS=Arabidopsis thaliana GN=FKBP13 PE=1 SV=2
trembl
ID B9GN09
description Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0001s12230g PE=4 SV=2
Gene Ontology
ID GO:0006457
description peptidyl-prolyl cis-trans isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28833: 58744-60968 , PASA_asmbl_28834: 59439-60880
cDNA
(Sanger)
(ID:Location)		 023_F22.ab1: 59439-60880

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002752_020 0.0 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
2 Hb_000497_050 0.0281841002 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
3 Hb_146255_030 0.0390873617 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
4 Hb_004032_400 0.0431913534 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
5 Hb_008225_050 0.0461574016 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
6 Hb_001277_350 0.04923031 - - early light-induced protein, putative [Ricinus communis]
7 Hb_004338_050 0.0492917261 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
8 Hb_002534_020 0.0523237343 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
9 Hb_002121_050 0.0546077582 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
10 Hb_001975_100 0.055600721 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
11 Hb_000254_130 0.0558861191 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
12 Hb_000418_130 0.0587190997 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
13 Hb_001999_230 0.0601074268 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
14 Hb_007537_040 0.060404215 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
15 Hb_001307_050 0.0628861988 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
16 Hb_033187_010 0.0668151169 - - epoxide hydrolase, putative [Ricinus communis]
17 Hb_001006_040 0.0670646628 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_001735_040 0.0681212705 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
19 Hb_002028_020 0.0685604671 - - acyltransferase, putative [Ricinus communis]
20 Hb_003025_160 0.0688705078 - - Protein HVA22, putative [Ricinus communis]

Gene co-expression network

sample Hb_002752_020 Hb_002752_020 Hb_000497_050 Hb_000497_050 Hb_002752_020--Hb_000497_050 Hb_146255_030 Hb_146255_030 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_001277_350 Hb_001277_350 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_004338_050 Hb_001307_050 Hb_001307_050 Hb_000497_050--Hb_001307_050 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_146255_030--Hb_004032_400 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_146255_030--Hb_001307_050 Hb_146255_030--Hb_001277_350 Hb_000418_130 Hb_000418_130 Hb_004032_400--Hb_000418_130 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_009588_010 Hb_009588_010 Hb_004032_400--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_004032_400--Hb_002028_020 Hb_007537_040 Hb_007537_040 Hb_008225_050--Hb_007537_040 Hb_000254_130 Hb_000254_130 Hb_008225_050--Hb_000254_130 Hb_003025_160 Hb_003025_160 Hb_008225_050--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_001277_350--Hb_002534_020 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001277_350--Hb_001975_100 Hb_001999_230 Hb_001999_230 Hb_004338_050--Hb_001999_230 Hb_004338_050--Hb_001307_050 Hb_004338_050--Hb_008225_050 Hb_004338_050--Hb_146255_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.12166 56.8698 35.4652 0.020314 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0496254 0.0780617 0 0.423624 95.2922

CAGE analysis