Hb_000497_050

Information

Type -
Description -
Location Contig497: 22839-23366
Sequence    

Annotation

kegg
ID rcu:RCOM_1438960
description Photosystem II 11 kDa protein precursor, putative
nr
ID XP_012088669.1
description PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LR64
description Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1
trembl
ID B9RG39
description Photosystem II 11 kDa protein, putative OS=Ricinus communis GN=RCOM_1438960 PE=3 SV=1
Gene Ontology
ID GO:0009534
description photosystem ii repair protein psb27- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45510: 22761-23524
cDNA
(Sanger)
(ID:Location)		 003_F21.ab1: 13750-23518 , 009_E19.ab1: 13743-23521 , 015_D24.ab1: 13743-23419 , 017_G05.ab1: 22765-23361 , 031_F11.ab1: 13749-23421 , 041_H08.ab1: 13749-23489 , 043_G23.ab1: 22765-23510 , 047_M19.ab1: 22765-23508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_050 0.0 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
2 Hb_002752_020 0.0281841002 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
3 Hb_001277_350 0.043496873 - - early light-induced protein, putative [Ricinus communis]
4 Hb_004338_050 0.046903247 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
5 Hb_001307_050 0.0492933667 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
6 Hb_146255_030 0.0495854861 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
7 Hb_002121_050 0.0499444525 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
8 Hb_002534_020 0.0502989358 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
9 Hb_001999_230 0.0521412154 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
10 Hb_004032_400 0.0566009331 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
11 Hb_033187_010 0.058505454 - - epoxide hydrolase, putative [Ricinus communis]
12 Hb_001975_100 0.0604711024 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
13 Hb_000254_130 0.0605632721 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
14 Hb_008225_050 0.0608298142 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
15 Hb_000179_010 0.0646552114 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_029991_010 0.0648662199 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
17 Hb_011724_040 0.067795547 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
18 Hb_005063_030 0.0707146519 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_001564_120 0.072124273 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
20 Hb_000099_120 0.0721828629 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_050 Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_000497_050--Hb_004338_050 Hb_001307_050 Hb_001307_050 Hb_000497_050--Hb_001307_050 Hb_146255_030 Hb_146255_030 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_001277_350 Hb_002752_020--Hb_004338_050 Hb_002534_020 Hb_002534_020 Hb_001277_350--Hb_002534_020 Hb_001277_350--Hb_146255_030 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001975_100 Hb_001975_100 Hb_001277_350--Hb_001975_100 Hb_001999_230 Hb_001999_230 Hb_004338_050--Hb_001999_230 Hb_004338_050--Hb_001307_050 Hb_004338_050--Hb_008225_050 Hb_004338_050--Hb_146255_030 Hb_000179_010 Hb_000179_010 Hb_001307_050--Hb_000179_010 Hb_029991_010 Hb_029991_010 Hb_001307_050--Hb_029991_010 Hb_001307_050--Hb_146255_030 Hb_004837_010 Hb_004837_010 Hb_001307_050--Hb_004837_010 Hb_146255_030--Hb_004032_400 Hb_146255_030--Hb_002534_020 Hb_006132_080 Hb_006132_080 Hb_002121_050--Hb_006132_080 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105277 9.31077 182.898 120.955 0 0.0471377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368702 0.482816 0 1.67803 345.516

CAGE analysis