Hb_156093_010

Information

Type -
Description -
Location Contig156093: 6877-8708
Sequence    

Annotation

kegg
ID rcu:RCOM_0504250
description hypothetical protein
nr
ID XP_002530722.1
description hypothetical protein RCOM_0504250 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0504250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156093_010 0.0 - - hypothetical protein RCOM_0504250 [Ricinus communis]
2 Hb_002121_050 0.0629065064 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
3 Hb_007537_040 0.0707852091 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
4 Hb_000185_010 0.0719813122 - - Alliin lyase precursor, putative [Ricinus communis]
5 Hb_003777_080 0.0735140102 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
6 Hb_000369_110 0.0748296474 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_004970_060 0.0763058596 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
8 Hb_008195_070 0.0804617004 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000069_760 0.0806962226 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
10 Hb_087599_010 0.0814913939 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
11 Hb_008225_050 0.084025744 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
12 Hb_006132_080 0.084225902 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
13 Hb_153258_040 0.0871084789 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
14 Hb_002762_050 0.0891237679 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
15 Hb_001735_040 0.0893030725 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
16 Hb_002752_020 0.0939576233 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
17 Hb_003371_080 0.0940536337 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
18 Hb_000497_050 0.0961559737 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
19 Hb_127263_010 0.0963703779 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
20 Hb_000333_010 0.0984422148 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_156093_010 Hb_156093_010 Hb_002121_050 Hb_002121_050 Hb_156093_010--Hb_002121_050 Hb_007537_040 Hb_007537_040 Hb_156093_010--Hb_007537_040 Hb_000185_010 Hb_000185_010 Hb_156093_010--Hb_000185_010 Hb_003777_080 Hb_003777_080 Hb_156093_010--Hb_003777_080 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_004970_060 Hb_004970_060 Hb_156093_010--Hb_004970_060 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_006132_080 Hb_006132_080 Hb_002121_050--Hb_006132_080 Hb_002752_020 Hb_002752_020 Hb_002121_050--Hb_002752_020 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_002121_050--Hb_007537_040 Hb_007537_040--Hb_008225_050 Hb_007537_040--Hb_000369_110 Hb_003025_160 Hb_003025_160 Hb_007537_040--Hb_003025_160 Hb_007537_040--Hb_004970_060 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000012_370 Hb_000012_370 Hb_000185_010--Hb_000012_370 Hb_000008_160 Hb_000008_160 Hb_000185_010--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_000185_010--Hb_087599_010 Hb_000185_010--Hb_006132_080 Hb_003777_080--Hb_087599_010 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_153258_040 Hb_153258_040 Hb_003777_080--Hb_153258_040 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_003777_080--Hb_004970_060 Hb_000369_110--Hb_003025_160 Hb_000369_110--Hb_002121_050 Hb_000369_110--Hb_008225_050 Hb_000369_110--Hb_002752_020 Hb_000254_130 Hb_000254_130 Hb_000369_110--Hb_000254_130 Hb_004970_060--Hb_003025_160 Hb_004970_060--Hb_008225_050 Hb_004970_060--Hb_000254_130 Hb_001999_230 Hb_001999_230 Hb_004970_060--Hb_001999_230 Hb_004970_060--Hb_153258_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0429887 1.49635 0.784589 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108614 2.37373

CAGE analysis