Hb_000185_010

Information

Type -
Description -
Location Contig185: 6035-8977
Sequence    

Annotation

kegg
ID rcu:RCOM_1509450
description Alliin lyase precursor, putative (EC:4.4.1.4)
nr
ID XP_002511347.1
description Alliin lyase precursor, putative [Ricinus communis]
swissprot
ID Q94A02
description Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1
trembl
ID B9RAX2
description Alliin lyase, putative OS=Ricinus communis GN=RCOM_1509450 PE=4 SV=1
Gene Ontology
ID GO:0030170
description tryptophan aminotransferase-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18098: 6051-6771 , PASA_asmbl_18099: 7140-8956 , PASA_asmbl_18100: 9156-9309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_010 0.0 - - Alliin lyase precursor, putative [Ricinus communis]
2 Hb_000069_760 0.0625437631 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
3 Hb_000012_370 0.066769226 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_160 0.0691063161 - - carboxy-lyase, putative [Ricinus communis]
5 Hb_087599_010 0.0699471418 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
6 Hb_156093_010 0.0719813122 - - hypothetical protein RCOM_0504250 [Ricinus communis]
7 Hb_006132_080 0.0790527012 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
8 Hb_002121_050 0.0804623915 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
9 Hb_000589_410 0.084025001 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
10 Hb_003186_030 0.0842728481 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
11 Hb_002870_070 0.0851503634 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_003777_080 0.085844218 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
13 Hb_002762_050 0.0892929761 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
14 Hb_002592_040 0.0896483643 - - ACC oxidase 3 [Hevea brasiliensis]
15 Hb_176135_010 0.0898433911 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_001856_240 0.0918556386 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
17 Hb_000230_420 0.0922934427 - - GS [Hevea brasiliensis subsp. brasiliensis]
18 Hb_013405_110 0.0934849809 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_000694_080 0.0936364934 - - phosphoribulose kinase, putative [Ricinus communis]
20 Hb_004452_070 0.0943639081 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000185_010 Hb_000185_010 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000012_370 Hb_000012_370 Hb_000185_010--Hb_000012_370 Hb_000008_160 Hb_000008_160 Hb_000185_010--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_000390_160 Hb_000390_160 Hb_000069_760--Hb_000390_160 Hb_000069_760--Hb_006132_080 Hb_002121_050 Hb_002121_050 Hb_000069_760--Hb_002121_050 Hb_000069_760--Hb_156093_010 Hb_003777_080 Hb_003777_080 Hb_000069_760--Hb_003777_080 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_176135_010 Hb_176135_010 Hb_000012_370--Hb_176135_010 Hb_008748_050 Hb_008748_050 Hb_000012_370--Hb_008748_050 Hb_086022_020 Hb_086022_020 Hb_000012_370--Hb_086022_020 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_000008_160--Hb_087599_010 Hb_000694_080 Hb_000694_080 Hb_087599_010--Hb_000694_080 Hb_087599_010--Hb_003777_080 Hb_087599_010--Hb_002762_050 Hb_087599_010--Hb_002093_020 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_156093_010--Hb_002121_050 Hb_007537_040 Hb_007537_040 Hb_156093_010--Hb_007537_040 Hb_156093_010--Hb_003777_080 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_004970_060 Hb_004970_060 Hb_156093_010--Hb_004970_060 Hb_006132_080--Hb_002121_050 Hb_003186_030 Hb_003186_030 Hb_006132_080--Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_006132_080--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_006132_080--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0566129 2.86094 1.21666 0.0128087 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.156545 5.53882

CAGE analysis