Hb_002870_070

Information

Type -
Description -
Location Contig2870: 120730-124221
Sequence    

Annotation

kegg
ID rcu:RCOM_0904910
description multidrug resistance pump, putative
nr
ID XP_002518492.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RXM3
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0904910 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29920: 120686-124206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002870_070 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_004871_030 0.0667396747 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001856_240 0.072435848 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
4 Hb_000008_160 0.0747214528 - - carboxy-lyase, putative [Ricinus communis]
5 Hb_000185_010 0.0851503634 - - Alliin lyase precursor, putative [Ricinus communis]
6 Hb_000069_760 0.0884772652 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
7 Hb_003847_070 0.0898088733 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_002592_040 0.0929498381 - - ACC oxidase 3 [Hevea brasiliensis]
9 Hb_001006_160 0.1003449881 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000047_100 0.1021333438 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
11 Hb_140249_020 0.102517065 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
12 Hb_000012_370 0.1035929243 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000589_410 0.1051436526 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
14 Hb_027380_080 0.1059508549 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
15 Hb_176135_010 0.1066086974 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_075050_010 0.107055773 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_003020_120 0.1084384077 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
18 Hb_001141_340 0.1091546648 - - PREDICTED: cysteine synthase [Jatropha curcas]
19 Hb_002762_050 0.1091952766 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
20 Hb_087599_010 0.1116951665 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]

Gene co-expression network

sample Hb_002870_070 Hb_002870_070 Hb_004871_030 Hb_004871_030 Hb_002870_070--Hb_004871_030 Hb_001856_240 Hb_001856_240 Hb_002870_070--Hb_001856_240 Hb_000008_160 Hb_000008_160 Hb_002870_070--Hb_000008_160 Hb_000185_010 Hb_000185_010 Hb_002870_070--Hb_000185_010 Hb_000069_760 Hb_000069_760 Hb_002870_070--Hb_000069_760 Hb_003847_070 Hb_003847_070 Hb_002870_070--Hb_003847_070 Hb_004871_030--Hb_003847_070 Hb_004871_030--Hb_001856_240 Hb_004871_030--Hb_000008_160 Hb_004871_030--Hb_000185_010 Hb_003171_040 Hb_003171_040 Hb_004871_030--Hb_003171_040 Hb_008748_050 Hb_008748_050 Hb_001856_240--Hb_008748_050 Hb_176135_010 Hb_176135_010 Hb_001856_240--Hb_176135_010 Hb_001856_240--Hb_003847_070 Hb_000012_370 Hb_000012_370 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_000008_160--Hb_087599_010 Hb_000185_010--Hb_000069_760 Hb_000185_010--Hb_000012_370 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_000390_160 Hb_000390_160 Hb_000069_760--Hb_000390_160 Hb_000069_760--Hb_006132_080 Hb_002121_050 Hb_002121_050 Hb_000069_760--Hb_002121_050 Hb_000069_760--Hb_156093_010 Hb_003777_080 Hb_003777_080 Hb_000069_760--Hb_003777_080 Hb_003847_070--Hb_176135_010 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.909636 0.751406 299.905 90.0028 0.433106 0.211008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51643 0.755646 2.63197 21.5172 593.523

CAGE analysis