Hb_001856_240

Information

Type transcription factor
Description TF Family: TCP
Location Contig1856: 286357-287469
Sequence    

Annotation

kegg
ID tcc:TCM_018809
description Plastid transcription factor 1, putative isoform 1
nr
ID XP_007032773.1
description Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9S7W5
description Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1
trembl
ID A0A061EN21
description Plastid transcription factor 1, putative isoform 1 OS=Theobroma cacao GN=TCM_018809 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tcp13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_240 0.0 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
2 Hb_008748_050 0.0660586746 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
3 Hb_176135_010 0.0665083644 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_003847_070 0.0675332838 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
5 Hb_000012_370 0.0684069218 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001006_160 0.0709402055 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002870_070 0.072435848 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_027380_080 0.0756912779 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
9 Hb_000047_100 0.0769662918 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
10 Hb_107748_010 0.0787875461 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
11 Hb_086022_020 0.0825885679 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
12 Hb_005375_090 0.082825073 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
13 Hb_003090_050 0.0839874227 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
14 Hb_003747_090 0.0857458395 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_002785_040 0.0863505769 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
16 Hb_000923_030 0.0873633908 - - F-box family protein [Populus trichocarpa]
17 Hb_000010_380 0.087532514 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
18 Hb_000251_160 0.088106192 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_001104_080 0.0882412338 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_001046_060 0.0885689572 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_001856_240 Hb_001856_240 Hb_008748_050 Hb_008748_050 Hb_001856_240--Hb_008748_050 Hb_176135_010 Hb_176135_010 Hb_001856_240--Hb_176135_010 Hb_003847_070 Hb_003847_070 Hb_001856_240--Hb_003847_070 Hb_000012_370 Hb_000012_370 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002870_070 Hb_002870_070 Hb_001856_240--Hb_002870_070 Hb_086022_020 Hb_086022_020 Hb_008748_050--Hb_086022_020 Hb_008748_050--Hb_176135_010 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_008748_050--Hb_000012_370 Hb_176135_010--Hb_000012_370 Hb_176135_010--Hb_086022_020 Hb_176135_010--Hb_003847_070 Hb_002785_040 Hb_002785_040 Hb_176135_010--Hb_002785_040 Hb_000251_160 Hb_000251_160 Hb_176135_010--Hb_000251_160 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_005276_080 Hb_005276_080 Hb_001006_160--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_001006_160--Hb_006665_020 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_001006_160--Hb_000083_180 Hb_004871_030 Hb_004871_030 Hb_002870_070--Hb_004871_030 Hb_000008_160 Hb_000008_160 Hb_002870_070--Hb_000008_160 Hb_002870_070--Hb_000185_010 Hb_000069_760 Hb_000069_760 Hb_002870_070--Hb_000069_760 Hb_002870_070--Hb_003847_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0388593 0.569613 41.3093 11.5212 0 0.14548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22212 0.0698853 0 1.59809 95.2511

CAGE analysis