Hb_000320_370

Information

Type -
Description -
Location Contig320: 291128-292258
Sequence    

Annotation

kegg
ID tcc:TCM_030229
description ATPase, F1 complex, gamma subunit protein
nr
ID XP_012091343.1
description PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
swissprot
ID P29790
description ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1
trembl
ID A0A061GFT3
description ATPase, F1 complex, gamma subunit protein OS=Theobroma cacao GN=TCM_030229 PE=3 SV=1
Gene Ontology
ID GO:0045261
description atp synthase gamma chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_J08.ab1: 291515-292336 , 005_M16.ab1: 291524-292336 , 014_C16.ab1: 291524-292336 , 025_F18.ab1: 291610-292358 , 042_J20.ab1: 291523-292340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_370 0.0 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
2 Hb_002809_030 0.0423636811 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002785_040 0.0544178883 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_086022_020 0.0556028494 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
5 Hb_000352_230 0.0571291977 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_008748_050 0.0600910623 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
7 Hb_000589_340 0.0646822413 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_001348_160 0.065126608 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000012_370 0.0669046976 - - conserved hypothetical protein [Ricinus communis]
10 Hb_176135_010 0.067487714 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_007044_270 0.0686791463 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
12 Hb_013405_110 0.0691306695 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_001191_060 0.0708363594 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
14 Hb_000230_420 0.0711914708 - - GS [Hevea brasiliensis subsp. brasiliensis]
15 Hb_000545_180 0.0730209613 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
16 Hb_003747_090 0.0735539169 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_002818_130 0.0737956557 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000098_040 0.0743616003 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
19 Hb_001269_480 0.0756339098 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
20 Hb_004452_070 0.0761305964 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_370 Hb_000320_370 Hb_002809_030 Hb_002809_030 Hb_000320_370--Hb_002809_030 Hb_002785_040 Hb_002785_040 Hb_000320_370--Hb_002785_040 Hb_086022_020 Hb_086022_020 Hb_000320_370--Hb_086022_020 Hb_000352_230 Hb_000352_230 Hb_000320_370--Hb_000352_230 Hb_008748_050 Hb_008748_050 Hb_000320_370--Hb_008748_050 Hb_000589_340 Hb_000589_340 Hb_000320_370--Hb_000589_340 Hb_002809_030--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_002809_030--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_002809_030--Hb_000098_040 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060 Hb_003747_090 Hb_003747_090 Hb_002785_040--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_086022_020--Hb_004129_170 Hb_086022_020--Hb_008748_050 Hb_086022_020--Hb_003747_090 Hb_086022_020--Hb_005375_090 Hb_009771_090 Hb_009771_090 Hb_000352_230--Hb_009771_090 Hb_000352_230--Hb_000098_040 Hb_000545_180 Hb_000545_180 Hb_000352_230--Hb_000545_180 Hb_000352_230--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_000352_230--Hb_014361_120 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_000012_370 Hb_000012_370 Hb_008748_050--Hb_000012_370 Hb_000139_310 Hb_000139_310 Hb_000589_340--Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000589_340--Hb_001416_130 Hb_000450_050 Hb_000450_050 Hb_000589_340--Hb_000450_050 Hb_006570_030 Hb_006570_030 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_000589_340--Hb_002785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13814 9.05644 163.925 74.3706 0.503819 0.178225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304975 0.0685393 0 0.316108 386.614

CAGE analysis