Hb_176135_010

Information

Type -
Description -
Location Contig176135: 62-1853
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q6XAT2
description LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176135_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_008748_050 0.0434799635 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
3 Hb_000012_370 0.0536506564 - - conserved hypothetical protein [Ricinus communis]
4 Hb_086022_020 0.0580341663 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
5 Hb_003847_070 0.0601501924 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
6 Hb_002785_040 0.0657480468 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
7 Hb_000251_160 0.0662765682 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_001856_240 0.0665083644 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
9 Hb_004129_170 0.0666049833 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
10 Hb_000320_370 0.067487714 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
11 Hb_003090_050 0.0690915869 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
12 Hb_000923_030 0.069472073 - - F-box family protein [Populus trichocarpa]
13 Hb_003747_090 0.0719758483 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001006_160 0.0738708652 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000825_010 0.0761192053 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
16 Hb_005375_090 0.0769210769 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
17 Hb_000450_050 0.0772912782 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
18 Hb_001191_060 0.0774830088 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
19 Hb_005605_020 0.0777999693 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_000111_460 0.078187723 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]

Gene co-expression network

sample Hb_176135_010 Hb_176135_010 Hb_008748_050 Hb_008748_050 Hb_176135_010--Hb_008748_050 Hb_000012_370 Hb_000012_370 Hb_176135_010--Hb_000012_370 Hb_086022_020 Hb_086022_020 Hb_176135_010--Hb_086022_020 Hb_003847_070 Hb_003847_070 Hb_176135_010--Hb_003847_070 Hb_002785_040 Hb_002785_040 Hb_176135_010--Hb_002785_040 Hb_000251_160 Hb_000251_160 Hb_176135_010--Hb_000251_160 Hb_008748_050--Hb_086022_020 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_008748_050--Hb_000012_370 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_086022_020--Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_086022_020--Hb_004129_170 Hb_086022_020--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_001856_240 Hb_001856_240 Hb_003847_070--Hb_001856_240 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_002785_040--Hb_003747_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_002785_040--Hb_004129_170 Hb_002785_040--Hb_000320_370 Hb_000251_160--Hb_004129_170 Hb_002374_480 Hb_002374_480 Hb_000251_160--Hb_002374_480 Hb_153106_010 Hb_153106_010 Hb_000251_160--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_000251_160--Hb_180007_010 Hb_132840_050 Hb_132840_050 Hb_000251_160--Hb_132840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.021564 0.140944 5.27169 1.74628 0.0335553 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0746648 12.8146

CAGE analysis