Hb_180007_010

Information

Type -
Description -
Location Contig180007: 4330-4933
Sequence    

Annotation

kegg
ID rcu:RCOM_0964450
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517776.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9SAH9
description Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1
trembl
ID B9RVK7
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964450 PE=4 SV=1
Gene Ontology
ID GO:0045551
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180007_010 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_153106_010 0.0177286791 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
3 Hb_002374_480 0.0330333144 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_132840_050 0.0385498756 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_000251_160 0.0394295487 - - chlorophyll A/B binding protein, putative [Ricinus communis]
6 Hb_000373_210 0.0419349716 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
7 Hb_004129_170 0.0428276381 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
8 Hb_000243_190 0.0536100255 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
9 Hb_001053_070 0.0547507114 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
10 Hb_031862_220 0.0557379697 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
11 Hb_005483_050 0.0561006267 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002400_200 0.056211339 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
13 Hb_000940_060 0.058486865 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_001049_130 0.0593150319 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
15 Hb_002890_170 0.0644418963 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
16 Hb_086022_020 0.0646459546 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
17 Hb_000825_010 0.0655940203 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
18 Hb_016334_010 0.0684690282 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
19 Hb_001936_100 0.0688486129 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001348_160 0.0712528121 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_180007_010 Hb_180007_010 Hb_153106_010 Hb_153106_010 Hb_180007_010--Hb_153106_010 Hb_002374_480 Hb_002374_480 Hb_180007_010--Hb_002374_480 Hb_132840_050 Hb_132840_050 Hb_180007_010--Hb_132840_050 Hb_000251_160 Hb_000251_160 Hb_180007_010--Hb_000251_160 Hb_000373_210 Hb_000373_210 Hb_180007_010--Hb_000373_210 Hb_004129_170 Hb_004129_170 Hb_180007_010--Hb_004129_170 Hb_153106_010--Hb_002374_480 Hb_153106_010--Hb_004129_170 Hb_153106_010--Hb_132840_050 Hb_153106_010--Hb_000251_160 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_002374_480--Hb_004129_170 Hb_002374_480--Hb_000251_160 Hb_002374_480--Hb_000373_210 Hb_002400_200 Hb_002400_200 Hb_002374_480--Hb_002400_200 Hb_000243_190 Hb_000243_190 Hb_132840_050--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_132840_050--Hb_016334_010 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_000251_160--Hb_004129_170 Hb_086022_020 Hb_086022_020 Hb_000251_160--Hb_086022_020 Hb_001053_070 Hb_001053_070 Hb_000373_210--Hb_001053_070 Hb_031862_220 Hb_031862_220 Hb_000373_210--Hb_031862_220 Hb_001049_130 Hb_001049_130 Hb_000373_210--Hb_001049_130 Hb_001936_100 Hb_001936_100 Hb_000373_210--Hb_001936_100 Hb_004129_170--Hb_086022_020 Hb_003747_090 Hb_003747_090 Hb_004129_170--Hb_003747_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.125676 0.0561529 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.36333

CAGE analysis