Hb_004129_170

Information

Type -
Description -
Location Contig4129: 120132-125853
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014688mg
description hypothetical protein
nr
ID XP_012070198.1
description PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
swissprot
ID Q6DR10
description Protein trichome birefringence-like 43 OS=Arabidopsis thaliana GN=TBL43 PE=2 SV=1
trembl
ID A0A067KUK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03938 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40901: 118472-119408 , PASA_asmbl_40903: 120155-125937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_170 0.0 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
2 Hb_000251_160 0.0248138801 - - chlorophyll A/B binding protein, putative [Ricinus communis]
3 Hb_002374_480 0.0330828897 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_086022_020 0.0338539655 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
5 Hb_153106_010 0.0373541998 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_180007_010 0.0428276381 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_003747_090 0.045802573 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_005375_090 0.0479635893 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_002400_200 0.0484163384 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
10 Hb_002890_170 0.0504641133 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
11 Hb_000825_010 0.0540366116 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
12 Hb_002785_040 0.0542139294 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
13 Hb_000373_210 0.057236008 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
14 Hb_132840_050 0.0588931449 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
15 Hb_082402_020 0.060275341 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
16 Hb_013405_110 0.0628597968 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_001053_070 0.0647127756 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
18 Hb_008748_050 0.0652567849 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
19 Hb_000923_030 0.0657252639 - - F-box family protein [Populus trichocarpa]
20 Hb_176135_010 0.0666049833 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004129_170 Hb_004129_170 Hb_000251_160 Hb_000251_160 Hb_004129_170--Hb_000251_160 Hb_002374_480 Hb_002374_480 Hb_004129_170--Hb_002374_480 Hb_086022_020 Hb_086022_020 Hb_004129_170--Hb_086022_020 Hb_153106_010 Hb_153106_010 Hb_004129_170--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_004129_170--Hb_180007_010 Hb_003747_090 Hb_003747_090 Hb_004129_170--Hb_003747_090 Hb_000251_160--Hb_086022_020 Hb_000251_160--Hb_002374_480 Hb_000251_160--Hb_153106_010 Hb_000251_160--Hb_180007_010 Hb_132840_050 Hb_132840_050 Hb_000251_160--Hb_132840_050 Hb_002374_480--Hb_180007_010 Hb_002374_480--Hb_153106_010 Hb_000373_210 Hb_000373_210 Hb_002374_480--Hb_000373_210 Hb_002400_200 Hb_002400_200 Hb_002374_480--Hb_002400_200 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_002785_040 Hb_002785_040 Hb_086022_020--Hb_002785_040 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_153106_010--Hb_180007_010 Hb_153106_010--Hb_132840_050 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_180007_010--Hb_132840_050 Hb_180007_010--Hb_000373_210 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.628759 74.276 27.8086 0 0.0200646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 186.792

CAGE analysis