Hb_002890_170

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig2890: 256017-256889
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00800g
description hypothetical protein
nr
ID XP_011012906.1
description PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
swissprot
ID Q9M9S0
description Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1
trembl
ID U5GLA1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s00800g PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_170 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
2 Hb_082402_020 0.0130392457 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
3 Hb_002400_200 0.04170346 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
4 Hb_003747_090 0.0465927303 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_005375_090 0.0475502087 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
6 Hb_004129_170 0.0504641133 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
7 Hb_153106_010 0.0512179932 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
8 Hb_001862_040 0.0513194188 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
9 Hb_002374_480 0.0533052215 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_001936_100 0.0633384346 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002014_140 0.0633545239 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_000334_290 0.0640892535 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_180007_010 0.0644418963 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_002785_040 0.0655835122 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
15 Hb_013405_110 0.065837797 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_000251_160 0.0675219022 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_000948_240 0.0682276089 - - conserved hypothetical protein [Ricinus communis]
18 Hb_086022_020 0.071116018 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
19 Hb_000825_010 0.0723428102 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
20 Hb_000373_210 0.0724192406 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002890_170 Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_002890_170--Hb_082402_020 Hb_002400_200 Hb_002400_200 Hb_002890_170--Hb_002400_200 Hb_003747_090 Hb_003747_090 Hb_002890_170--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002890_170--Hb_005375_090 Hb_004129_170 Hb_004129_170 Hb_002890_170--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002890_170--Hb_153106_010 Hb_001862_040 Hb_001862_040 Hb_082402_020--Hb_001862_040 Hb_082402_020--Hb_002400_200 Hb_082402_020--Hb_003747_090 Hb_082402_020--Hb_005375_090 Hb_000334_290 Hb_000334_290 Hb_082402_020--Hb_000334_290 Hb_001936_100 Hb_001936_100 Hb_002400_200--Hb_001936_100 Hb_001053_070 Hb_001053_070 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_000373_210 Hb_000373_210 Hb_002400_200--Hb_000373_210 Hb_001049_130 Hb_001049_130 Hb_002400_200--Hb_001049_130 Hb_003747_090--Hb_005375_090 Hb_002785_040 Hb_002785_040 Hb_003747_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_005375_090--Hb_002785_040 Hb_005375_090--Hb_013405_110 Hb_005375_090--Hb_004129_170 Hb_000251_160 Hb_000251_160 Hb_004129_170--Hb_000251_160 Hb_004129_170--Hb_002374_480 Hb_086022_020 Hb_086022_020 Hb_004129_170--Hb_086022_020 Hb_004129_170--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_004129_170--Hb_180007_010 Hb_153106_010--Hb_180007_010 Hb_153106_010--Hb_002374_480 Hb_132840_050 Hb_132840_050 Hb_153106_010--Hb_132840_050 Hb_153106_010--Hb_000251_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.12959 1.20018 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.62249

CAGE analysis