Hb_001936_100

Information

Type -
Description -
Location Contig1936: 89282-90281
Sequence    

Annotation

kegg
ID rcu:RCOM_0529190
description hypothetical protein
nr
ID XP_002525392.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0529190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19342: 89439-90234 , PASA_asmbl_19343: 89625-90025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002400_200 0.0261007897 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
3 Hb_001053_070 0.0272032313 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
4 Hb_001049_130 0.0300181693 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_000703_340 0.0385429732 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_000373_210 0.0422513174 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
7 Hb_031862_220 0.0438013812 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
8 Hb_005743_050 0.0515121189 - - unnamed protein product [Coffea canephora]
9 Hb_000987_030 0.0522360275 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
10 Hb_004452_070 0.0549788509 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
11 Hb_002374_480 0.0560207632 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_013405_110 0.0564415629 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_000139_170 0.0583227398 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
14 Hb_000251_150 0.0601065729 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_002890_170 0.0633384346 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
16 Hb_001862_040 0.0635588604 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
17 Hb_002014_150 0.0641192341 - - monooxygenase, putative [Ricinus communis]
18 Hb_004899_190 0.0654164247 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
19 Hb_082402_020 0.0656537018 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
20 Hb_004129_170 0.0670105781 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_100 Hb_001936_100 Hb_002400_200 Hb_002400_200 Hb_001936_100--Hb_002400_200 Hb_001053_070 Hb_001053_070 Hb_001936_100--Hb_001053_070 Hb_001049_130 Hb_001049_130 Hb_001936_100--Hb_001049_130 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340 Hb_000373_210 Hb_000373_210 Hb_001936_100--Hb_000373_210 Hb_031862_220 Hb_031862_220 Hb_001936_100--Hb_031862_220 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_002890_170 Hb_002890_170 Hb_002400_200--Hb_002890_170 Hb_002400_200--Hb_000373_210 Hb_002400_200--Hb_001049_130 Hb_001053_070--Hb_001049_130 Hb_001053_070--Hb_031862_220 Hb_001053_070--Hb_000373_210 Hb_000987_030 Hb_000987_030 Hb_001053_070--Hb_000987_030 Hb_001049_130--Hb_031862_220 Hb_001049_130--Hb_000373_210 Hb_001049_130--Hb_000987_030 Hb_002014_150 Hb_002014_150 Hb_000703_340--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_000703_340--Hb_163566_020 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_000703_340--Hb_005743_050 Hb_000373_210--Hb_031862_220 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 12.4743 5.91617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 26.3074

CAGE analysis