Hb_000703_340

Information

Type -
Description -
Location Contig703: 308244-309868
Sequence    

Annotation

kegg
ID rcu:RCOM_0536130
description Oxygen-evolving enhancer protein 2, chloroplast precursor, putative (EC:1.3.1.74)
nr
ID XP_002521576.1
description Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SLQ8
description Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1
trembl
ID B9S6F7
description Oxygen-evolving enhancer protein 2, chloroplast, putative OS=Ricinus communis GN=RCOM_0536130 PE=4 SV=1
Gene Ontology
ID GO:0009535
description oxygen-evolving enhancer protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54972: 308273-309872
cDNA
(Sanger)
(ID:Location)		 006_J02.ab1: 308310-309538 , 009_E14.ab1: 308310-309567 , 030_M24.ab1: 308310-309562 , 042_I18.ab1: 308310-309479

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_340 0.0 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
2 Hb_001936_100 0.0385429732 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002014_150 0.0465155125 - - monooxygenase, putative [Ricinus communis]
4 Hb_163566_020 0.0486814689 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002400_200 0.0488301123 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
6 Hb_000139_170 0.0496669691 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
7 Hb_005743_050 0.0515824892 - - unnamed protein product [Coffea canephora]
8 Hb_013405_110 0.0538493928 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_004452_070 0.0560227415 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
10 Hb_003032_080 0.0580439594 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001862_040 0.0583989064 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
12 Hb_001775_020 0.0592869415 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_001053_070 0.0594422127 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
14 Hb_004899_190 0.0598723138 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
15 Hb_001049_130 0.060609385 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
16 Hb_000987_030 0.0654942145 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
17 Hb_004048_080 0.0665530453 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
18 Hb_009707_020 0.0669801468 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
19 Hb_000844_080 0.0686277006 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
20 Hb_001295_070 0.0688581665 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_340 Hb_000703_340 Hb_001936_100 Hb_001936_100 Hb_000703_340--Hb_001936_100 Hb_002014_150 Hb_002014_150 Hb_000703_340--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_000703_340--Hb_163566_020 Hb_002400_200 Hb_002400_200 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_000703_340--Hb_005743_050 Hb_001936_100--Hb_002400_200 Hb_001053_070 Hb_001053_070 Hb_001936_100--Hb_001053_070 Hb_001049_130 Hb_001049_130 Hb_001936_100--Hb_001049_130 Hb_000373_210 Hb_000373_210 Hb_001936_100--Hb_000373_210 Hb_031862_220 Hb_031862_220 Hb_001936_100--Hb_031862_220 Hb_002014_150--Hb_163566_020 Hb_003032_080 Hb_003032_080 Hb_002014_150--Hb_003032_080 Hb_074312_010 Hb_074312_010 Hb_002014_150--Hb_074312_010 Hb_005610_070 Hb_005610_070 Hb_002014_150--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_002014_150--Hb_011382_010 Hb_010288_070 Hb_010288_070 Hb_002014_150--Hb_010288_070 Hb_163566_020--Hb_074312_010 Hb_163566_020--Hb_003032_080 Hb_163566_020--Hb_005610_070 Hb_163566_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_163566_020--Hb_007187_010 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_002890_170 Hb_002890_170 Hb_002400_200--Hb_002890_170 Hb_002400_200--Hb_000373_210 Hb_002400_200--Hb_001049_130 Hb_001775_020 Hb_001775_020 Hb_000139_170--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_000139_170--Hb_001295_070 Hb_000139_170--Hb_005743_050 Hb_000844_080 Hb_000844_080 Hb_000139_170--Hb_000844_080 Hb_009707_020 Hb_009707_020 Hb_000139_170--Hb_009707_020 Hb_001507_060 Hb_001507_060 Hb_000139_170--Hb_001507_060 Hb_000987_030 Hb_000987_030 Hb_005743_050--Hb_000987_030 Hb_005743_050--Hb_001775_020 Hb_005743_050--Hb_001295_070 Hb_158001_010 Hb_158001_010 Hb_005743_050--Hb_158001_010 Hb_000251_150 Hb_000251_150 Hb_005743_050--Hb_000251_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161825 0.0153842 58.3599 26.0991 0 0.0358626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0665455 0 0.0133375 106.864

CAGE analysis