Hb_001862_040

Information

Type -
Description -
Location Contig1862: 42097-44072
Sequence    

Annotation

kegg
ID rcu:RCOM_1155220
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_002524964.1
description heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
swissprot
ID Q3ZBR5
description Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1
trembl
ID B9SG45
description Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_1155220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18277: 43078-43207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_040 0.0 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
2 Hb_003032_080 0.031885899 - - conserved hypothetical protein [Ricinus communis]
3 Hb_082402_020 0.0403006926 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
4 Hb_000948_240 0.0500794008 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002890_170 0.0513194188 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
6 Hb_002014_150 0.0514142384 - - monooxygenase, putative [Ricinus communis]
7 Hb_003050_380 0.0528923387 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
8 Hb_163566_020 0.0547391745 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_010288_070 0.0553909583 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
10 Hb_002400_200 0.0563694593 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
11 Hb_000703_340 0.0583989064 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_002592_040 0.0596544229 - - ACC oxidase 3 [Hevea brasiliensis]
13 Hb_013405_110 0.0599336083 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_003747_090 0.0599767305 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_004048_080 0.0609306579 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
16 Hb_001936_100 0.0635588604 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005375_090 0.0641508376 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
18 Hb_003038_060 0.0654800317 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
19 Hb_005610_070 0.0690815767 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_002304_030 0.0694871715 - - hypothetical protein JCGZ_21517 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_040 Hb_001862_040 Hb_003032_080 Hb_003032_080 Hb_001862_040--Hb_003032_080 Hb_082402_020 Hb_082402_020 Hb_001862_040--Hb_082402_020 Hb_000948_240 Hb_000948_240 Hb_001862_040--Hb_000948_240 Hb_002890_170 Hb_002890_170 Hb_001862_040--Hb_002890_170 Hb_002014_150 Hb_002014_150 Hb_001862_040--Hb_002014_150 Hb_003050_380 Hb_003050_380 Hb_001862_040--Hb_003050_380 Hb_003032_080--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_003032_080--Hb_010288_070 Hb_163566_020 Hb_163566_020 Hb_003032_080--Hb_163566_020 Hb_005610_070 Hb_005610_070 Hb_003032_080--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_003032_080--Hb_074312_010 Hb_082402_020--Hb_002890_170 Hb_002400_200 Hb_002400_200 Hb_082402_020--Hb_002400_200 Hb_003747_090 Hb_003747_090 Hb_082402_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_082402_020--Hb_005375_090 Hb_000334_290 Hb_000334_290 Hb_082402_020--Hb_000334_290 Hb_002592_040 Hb_002592_040 Hb_000948_240--Hb_002592_040 Hb_000948_240--Hb_005375_090 Hb_000948_240--Hb_003747_090 Hb_000948_240--Hb_000334_290 Hb_013405_110 Hb_013405_110 Hb_000948_240--Hb_013405_110 Hb_002890_170--Hb_002400_200 Hb_002890_170--Hb_003747_090 Hb_002890_170--Hb_005375_090 Hb_004129_170 Hb_004129_170 Hb_002890_170--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002890_170--Hb_153106_010 Hb_002014_150--Hb_163566_020 Hb_002014_150--Hb_074312_010 Hb_002014_150--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_002014_150--Hb_011382_010 Hb_002014_150--Hb_010288_070 Hb_001170_020 Hb_001170_020 Hb_003050_380--Hb_001170_020 Hb_005888_020 Hb_005888_020 Hb_003050_380--Hb_005888_020 Hb_003050_380--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_003050_380--Hb_002304_030 Hb_000297_190 Hb_000297_190 Hb_003050_380--Hb_000297_190 Hb_003050_380--Hb_003032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.338863 0.100247 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.555683

CAGE analysis