Hb_000297_190

Information

Type -
Description -
Location Contig297: 199908-204066
Sequence    

Annotation

kegg
ID rcu:RCOM_0293270
description Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative (EC:3.2.1.26)
nr
ID AFR69123.1
description cell wall invertase [Manihot esculenta]
swissprot
ID P26792
description Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1
trembl
ID J9UMU3
description Cell wall invertase OS=Manihot esculenta GN=CWINV2 PE=2 SV=1
Gene Ontology
ID GO:0004575
description beta- insoluble isoenzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_190 0.0 - - cell wall invertase [Manihot esculenta]
2 Hb_005888_020 0.0167221772 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
3 Hb_001170_020 0.0232929571 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002304_030 0.0258379219 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
5 Hb_010288_070 0.0403688225 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
6 Hb_003836_040 0.0408531458 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
7 Hb_003050_380 0.0417142145 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
8 Hb_003605_170 0.0422781223 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
9 Hb_000834_160 0.0455116613 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
10 Hb_000210_020 0.0473816328 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
11 Hb_000977_250 0.0488922472 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_000053_010 0.0489793972 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
13 Hb_005610_070 0.0497542878 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_002434_040 0.0519399856 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
15 Hb_004464_040 0.0537092478 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
16 Hb_005754_050 0.0538829323 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
17 Hb_023313_050 0.0546058245 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
18 Hb_005280_020 0.0550863349 - - glycine cleavage system h protein, putative [Ricinus communis]
19 Hb_074312_010 0.0582366108 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
20 Hb_002284_290 0.0583388692 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000297_190 Hb_000297_190 Hb_005888_020 Hb_005888_020 Hb_000297_190--Hb_005888_020 Hb_001170_020 Hb_001170_020 Hb_000297_190--Hb_001170_020 Hb_002304_030 Hb_002304_030 Hb_000297_190--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_000297_190--Hb_010288_070 Hb_003836_040 Hb_003836_040 Hb_000297_190--Hb_003836_040 Hb_003050_380 Hb_003050_380 Hb_000297_190--Hb_003050_380 Hb_005888_020--Hb_001170_020 Hb_005888_020--Hb_002304_030 Hb_005888_020--Hb_010288_070 Hb_005888_020--Hb_003050_380 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070 Hb_001170_020--Hb_003050_380 Hb_001170_020--Hb_002304_030 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_002304_030--Hb_010288_070 Hb_002304_030--Hb_005610_070 Hb_002304_030--Hb_003050_380 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_010288_070--Hb_003050_380 Hb_003605_170 Hb_003605_170 Hb_003836_040--Hb_003605_170 Hb_002284_290 Hb_002284_290 Hb_003836_040--Hb_002284_290 Hb_000210_020 Hb_000210_020 Hb_003836_040--Hb_000210_020 Hb_000174_120 Hb_000174_120 Hb_003836_040--Hb_000174_120 Hb_005797_020 Hb_005797_020 Hb_003836_040--Hb_005797_020 Hb_000834_160 Hb_000834_160 Hb_003836_040--Hb_000834_160 Hb_003050_380--Hb_003032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.61903 0.419253 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.72623

CAGE analysis