Hb_003747_090

Information

Type -
Description -
Location Contig3747: 89874-92427
Sequence    

Annotation

kegg
ID pda:103712351
description glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
nr
ID XP_012067413.1
description PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID P12858
description Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2
trembl
ID B9RGT1
description Glyceraldehyde-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_1443660 PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38210: 89907-92387
cDNA
(Sanger)
(ID:Location)		 003_N08.ab1: 90042-91715 , 008_A13.ab1: 89907-91281 , 029_A23.ab1: 90977-91392 , 031_K12.ab1: 89907-91390 , 037_D15.ab1: 90042-91715 , 045_J13.ab1: 90042-91476

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_090 0.0 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_005375_090 0.0197979599 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
3 Hb_002785_040 0.0241381426 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_013405_110 0.0340094174 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_004129_170 0.045802573 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
6 Hb_002890_170 0.0465927303 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
7 Hb_082402_020 0.0465970081 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
8 Hb_086022_020 0.0474650819 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
9 Hb_002400_200 0.0522300604 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
10 Hb_001006_160 0.0577533646 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002374_480 0.0580540182 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_000948_240 0.05819595 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001862_040 0.0599767305 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
14 Hb_000251_160 0.0628370407 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_002592_040 0.0631924569 - - ACC oxidase 3 [Hevea brasiliensis]
16 Hb_107748_010 0.0645951866 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_027380_080 0.0669540027 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
18 Hb_003038_060 0.0673050875 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
19 Hb_001936_100 0.0681202399 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008748_050 0.0693044265 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_003747_090 Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_003747_090--Hb_005375_090 Hb_002785_040 Hb_002785_040 Hb_003747_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_003747_090--Hb_013405_110 Hb_004129_170 Hb_004129_170 Hb_003747_090--Hb_004129_170 Hb_002890_170 Hb_002890_170 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020 Hb_005375_090--Hb_002785_040 Hb_005375_090--Hb_013405_110 Hb_005375_090--Hb_002890_170 Hb_005375_090--Hb_004129_170 Hb_005375_090--Hb_082402_020 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_013405_110--Hb_002592_040 Hb_000251_160 Hb_000251_160 Hb_004129_170--Hb_000251_160 Hb_002374_480 Hb_002374_480 Hb_004129_170--Hb_002374_480 Hb_004129_170--Hb_086022_020 Hb_153106_010 Hb_153106_010 Hb_004129_170--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_004129_170--Hb_180007_010 Hb_002890_170--Hb_082402_020 Hb_002890_170--Hb_002400_200 Hb_002890_170--Hb_004129_170 Hb_002890_170--Hb_153106_010 Hb_001862_040 Hb_001862_040 Hb_082402_020--Hb_001862_040 Hb_082402_020--Hb_002400_200 Hb_000334_290 Hb_000334_290 Hb_082402_020--Hb_000334_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.73753 419.209 131.537 0 0.0392126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508268 0.164655 0 0.0469216 843.035

CAGE analysis