Hb_086022_020

Information

Type -
Description -
Location Contig86022: 11444-13431
Sequence    

Annotation

kegg
ID rcu:RCOM_1158790
description Ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative (EC:4.1.1.39)
nr
ID P29684.1
description RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P29684
description Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1
trembl
ID B1PLM0
description Ribulose bisphosphate carboxylase small chain OS=Hevea brasiliensis GN=rbcS PE=3 SV=1
Gene Ontology
ID GO:0004497
description ribulose bisphosphate carboxylase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60797: 11535-13398 , PASA_asmbl_60798: 11444-13398 , PASA_asmbl_60799: 11440-13474
cDNA
(Sanger)
(ID:Location)		 001_A04.ab1: 11444-13363 , 001_A10.ab1: 11450-13389 , 001_H16.ab1: 11444-13391 , 001_J05.ab1: 11446-13362 , 001_M23.ab1: 11457-13430 , 001_P11.ab1: 11446-13362 , 002_A10.ab1: 11447-13381 , 002_B14.ab1: 11454-13398 , 002_F24.ab1: 11444-13355 , 002_J24.ab1: 11450-13360 , 002_L12.ab1: 11443-13391 , 003_G02.ab1: 11443-13380 , 003_I18.ab1: 11443-13348 , 004_A24.ab1: 11454-13400 , 004_D15.ab1: 11446-13356 , 004_F18.ab1: 11444-13310 , 004_J24.ab1: 11446-13326 , 004_K20.ab1: 11457-13383 , 004_L19.ab1: 11450-13349 , 004_L23.ab1: 11443-13391 , 004_N13.ab1: 11443-13310 , 004_P17.ab1: 11450-13392 , 005_G19.ab1: 11446-13390 , 005_I02.ab1: 11450-13400 , 005_K23.ab1: 11450-13370 , 005_L03.ab1: 11443-13393 , 005_M06.ab1: 11450-13384 , 005_N05.ab1: 11447-13382 , 006_B13.ab1: 11450-13387 , 006_E12.ab1: 11443-13392 , 006_F14.ab1: 11444-13398 , 006_K07.ab1: 11443-13392 , 006_M17.ab1: 11443-13289 , 007_E06.ab1: 11453-13387 , 007_E13.ab1: 11446-13391 , 007_G23.ab1: 11443-13365 , 007_H09.ab1: 11446-13392 , 007_K09.ab1: 11443-13326 , 007_P23.ab1: 11450-13360 , 008_B09.ab1: 11625-13386 , 009_D01.ab1: 11450-13331 , 009_F09.ab1: 11467-13281 , 009_H18.ab1: 11446-13387 , 009_L04.ab1: 11469-12950 , 009_N01.ab1: 11444-13271 , 009_P06.ab1: 11443-13266 , 010_A01.ab1: 11447-13348 , 010_A06.ab1: 11442-13382 , 010_J20.ab1: 11447-13305 , 010_K05.ab1: 11443-13315 , 011_B17.ab1: 11443-13392 , 011_D21.ab1: 11446-13392 , 011_E11.ab1: 11444-13365 , 011_K19.ab1: 11445-13390 , 012_B03.ab1: 11443-13392 , 012_D14.ab1: 11444-13289 , 012_E14.ab1: 11443-13024 , 012_F06.ab1: 11444-13362 , 012_I05.ab1: 11444-13391 , 012_M18.ab1: 11443-13393 , 013_A20.ab1: 11446-13238 , 013_B10.ab1: 11447-13338 , 013_E11.ab1: 11447-13226 , 013_G08.ab1: 11450-13151 , 013_G21.ab1: 11443-13322 , 013_I16.ab1: 11443-13345 , 013_L08.ab1: 11450-13260 , 013_L09.ab1: 11444-13309 , 014_C14.ab1: 11447-13392 , 014_E14.ab1: 11457-13392 , 014_F11.ab1: 11443-13383 , 014_J18.ab1: 11450-13355 , 014_K12.ab1: 11467-13354 , 014_N02.ab1: 11444-13345 , 015_B19.ab1: 11450-12835 , 015_C17.ab1: 11450-13220 , 015_E07.ab1: 11450-13239 , 015_H18.ab1: 11450-13357 , 015_K07.ab1: 11443-13311 , 015_L10.ab1: 11443-13280 , 015_M22.ab1: 11459-13153 , 015_O02.ab1: 11493-13206 , 016_B09.ab1: 11450-12833 , 016_E15.ab1: 11447-13326 , 016_H19.ab1: 11457-13291 , 016_I18.ab1: 11450-13313 , 016_L09.ab1: 11444-13306 , 016_N12.ab1: 11465-13206 , 016_O10.ab1: 11447-13401 , 017_C02.ab1: 11450-13231 , 017_G15.ab1: 11450-13304 , 017_I06.ab1: 11443-13346 , 017_M09.ab1: 11444-13205 , 017_O15.ab1: 11443-13257 , 018_A21.ab1: 11447-13365 , 018_D03.ab1: 11444-13316 , 018_F08.ab1: 11443-13288 , 018_O15.ab1: 11446-13286 , 019_A21.ab1: 11457-13223 , 019_D09.ab1: 11444-13355 , 019_E24.ab1: 11442-13392 , 019_F07.ab1: 11442-13186 , 019_H24.ab1: 11450-13370 , 020_N12.ab1: 11446-13392 , 020_O12.ab1: 11444-13391 , 020_O18.ab1: 11447-13361 , 020_P16.ab1: 11450-13307 , 021_C12.ab1: 11446-13239 , 021_G10.ab1: 11444-13358 , 021_O18.ab1: 11443-13307 , 021_P10.ab1: 11450-13311 , 022_C10.ab1: 11449-12957 , 022_F23.ab1: 11443-13347 , 022_J11.ab1: 11444-13232 , 022_M05.ab1: 11443-13183 , 023_H07.ab1: 11446-13101 , 024_D15.ab1: 11447-13319 , 024_H11.ab1: 11446-13290 , 024_M20.ab1: 11457-13356 , 024_P05.ab1: 11450-13231 , 025_C09.ab1: 11450-13339 , 025_J15.ab1: 11446-13358 , 025_K11.ab1: 11444-13220 , 025_N15.ab1: 11457-13392 , 026_A11.ab1: 11457-13292 , 026_D15.ab1: 11443-13256 , 026_D17.ab1: 11446-13288 , 026_E03.ab1: 11445-13100 , 026_E19.ab1: 11446-13250 , 026_E21.ab1: 11461-13312 , 026_G17.ab1: 11451-13237 , 026_I22.ab1: 11452-13308 , 026_J15.ab1: 11450-13357 , 026_K09.ab1: 11444-13195 , 027_D21.ab1: 11446-13360 , 027_E13.ab1: 11446-13291 , 027_K09.ab1: 11448-13366 , 028_A10.ab1: 11444-13250 , 028_F21.ab1: 11446-13310 , 028_J23.ab1: 11447-13303 , 028_L23.ab1: 11444-13314 , 028_O16.ab1: 11445-13176 , 029_B22.ab1: 11460-11637 , 029_G12.ab1: 11444-13313 , 029_G17.ab1: 11446-12790 , 029_N03.ab1: 11443-13232 , 029_N15.ab1: 11443-13314 , 029_P07.ab1: 11444-13243 , 030_A05.ab1: 11450-13204 , 030_H24.ab1: 11443-13326 , 030_J01.ab1: 11450-13319 , 030_J03.ab1: 11443-13298 , 030_K06.ab1: 11444-13357 , 031_A11.ab1: 11444-13393 , 031_I21.ab1: 11444-13354 , 031_O01.ab1: 11447-13291 , 031_P07.ab1: 11444-13298 , 032_H02.ab1: 11443-13340 , 032_K16.ab1: 11443-13260 , 032_L10.ab1: 11457-13306 , 033_A07.ab1: 11447-13329 , 033_A20.ab1: 11443-13363 , 033_C21.ab1: 11443-13303 , 033_F07.ab1: 11625-13386 , 033_G14.ab1: 11444-13036 , 033_N03.ab1: 11446-13389 , 033_O13.ab1: 11444-13198 , 033_P13.ab1: 11504-13230 , 034_G13.ab1: 11450-13386 , 034_O03.ab1: 11446-13338 , 034_O05.ab1: 11450-13314 , 035_D20.ab1: 11446-13360 , 035_E04.ab1: 11444-13357 , 035_M04.ab1: 13037-13362 , 035_N09.ab1: 11443-13388 , 035_N11.ab1: 11447-13291 , 035_P04.ab1: 11450-13396 , 035_P17.ab1: 11446-13309 , 036_B03.ab1: 11457-13383 , 036_B08.ab1: 11467-13381 , 036_F05.ab1: 11444-13391 , 036_K22.ab1: 11443-13396 , 037_D17.ab1: 11450-13239 , 037_G10.ab1: 11444-13339 , 037_H04.ab1: 11443-13392 , 037_J11.ab1: 11450-13365 , 037_K22.ab1: 11444-13390 , 037_O05.ab1: 11450-13305 , 038_B23.ab1: 11457-13309 , 038_E01.ab1: 11450-13392 , 038_G02.ab1: 11446-13400 , 039_D09.ab1: 11457-13345 , 039_M12.ab1: 11451-13292 , 039_O12.ab1: 11443-13290 , 039_P22.ab1: 11446-13377 , 040_E02.ab1: 11444-13392 , 040_H15.ab1: 11446-13391 , 040_K01.ab1: 11444-13345 , 040_K13.ab1: 11447-13365 , 040_M22.ab1: 11444-13392 , 040_N21.ab1: 11443-13368 , 040_O15.ab1: 11457-13357 , 041_C15.ab1: 11444-13303 , 041_F13.ab1: 11450-13357 , 041_G15.ab1: 11446-13238 , 041_J13.ab1: 11457-13319 , 041_M20.ab1: 11443-13292 , 042_H01.ab1: 11446-13429 , 042_H05.ab1: 11444-13331 , 042_H08.ab1: 11444-13345 , 042_L21.ab1: 11444-13365 , 043_D19.ab1: 11446-13289 , 043_E15.ab1: 11450-13294 , 043_E21.ab1: 11444-13358 , 043_G06.ab1: 11446-13329 , 043_O16.ab1: 11443-13200 , 044_B05.ab1: 11443-13382 , 044_K01.ab1: 11443-13314 , 044_L01.ab1: 11443-13312 , 044_L15.ab1: 11444-13237 , 045_A06.ab1: 11467-13374 , 045_B21.ab1: 11446-13319 , 045_C12.ab1: 11450-13359 , 045_D13.ab1: 11457-13389 , 045_E17.ab1: 11450-13344 , 045_F13.ab1: 11450-13305 , 045_F14.ab1: 11457-13385 , 045_G05.ab1: 11443-13387 , 045_K21.ab1: 11446-13387 , 045_M18.ab1: 11467-13392 , 046_E01.ab1: 11444-13361 , 046_F02.ab1: 11443-13392 , 046_F22.ab1: 11457-13393 , 046_H02.ab1: 11457-13386 , 046_H04.ab1: 11443-13354 , 046_J01.ab1: 11446-13349 , 047_D15.ab1: 11444-13386 , 047_H14.ab1: 11454-13391 , 047_M17.ab1: 11444-13304 , 047_N15.ab1: 11446-13221 , 048_C04.ab1: 11446-13356 , 048_C20.ab1: 11444-13311 , 048_D02.ab1: 11446-13357 , 048_D09.ab1: 13330-13430 , 048_D14.ab1: 11447-13389 , 048_D18.ab1: 11467-13393 , 048_D22.ab1: 11450-13361 , 048_I14.ab1: 11443-13384 , 048_I15.ab1: 11447-13400 , 048_I24.ab1: 11443-13392 , 048_L02.ab1: 11444-13291 , 048_M06.ab1: 11450-13293 , 048_M23.ab1: 11444-13402 , 048_O17.ab1: 11443-13262 , 048_P21.ab1: 11446-13305 , 049_A09.ab1: 11447-13205 , 049_B13.ab1: 11444-13200 , 049_D21.ab1: 11446-13219 , 049_K14.ab1: 11443-13290 , 049_L05.ab1: 11450-13179 , 049_M14.ab1: 11443-13287 , 049_P07.ab1: 11447-13291 , 050_K07.ab1: 11447-13331 , 050_L04.ab1: 11443-13310 , 050_P15.ab1: 11454-13291 , 051_C03.ab1: 11446-13391 , 051_D05.ab1: 11447-13311 , 051_G14.ab1: 11446-13289 , 051_J13.ab1: 11443-13365 , 051_P22.ab1: 11446-13285 , 052_C09.ab1: 11446-13273 , 052_O03.ab1: 11443-13353 , 053_B19.ab1: 11457-13393 , 053_D04.ab1: 11443-13260 , 053_D15.ab1: 11446-13360 , 053_G12.ab1: 11444-13347 , 053_H18.ab1: 11457-13348 , 053_J21.ab1: 11444-13314 , 053_L05.ab1: 11444-13304 , 053_N03.ab1: 11450-13290 , 053_P22.ab1: 11446-13342

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086022_020 0.0 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
2 Hb_000251_160 0.0331451407 - - chlorophyll A/B binding protein, putative [Ricinus communis]
3 Hb_004129_170 0.0338539655 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
4 Hb_008748_050 0.0420324734 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
5 Hb_002785_040 0.0425683472 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
6 Hb_003747_090 0.0474650819 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_005375_090 0.0492738839 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
8 Hb_002374_480 0.0511847608 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000923_030 0.0550760502 - - F-box family protein [Populus trichocarpa]
10 Hb_000320_370 0.0556028494 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
11 Hb_176135_010 0.0580341663 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_001269_480 0.0589802873 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
13 Hb_000825_010 0.0605257892 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
14 Hb_153106_010 0.0610795322 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_001348_160 0.0614572315 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_013405_110 0.063596684 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_002818_130 0.0643486359 - - cytochrome P450, putative [Ricinus communis]
18 Hb_180007_010 0.0646459546 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000012_370 0.0661341091 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005605_020 0.0675967579 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_086022_020 Hb_086022_020 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_086022_020--Hb_004129_170 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_002785_040 Hb_002785_040 Hb_086022_020--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_000251_160--Hb_004129_170 Hb_002374_480 Hb_002374_480 Hb_000251_160--Hb_002374_480 Hb_153106_010 Hb_153106_010 Hb_000251_160--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_000251_160--Hb_180007_010 Hb_132840_050 Hb_132840_050 Hb_000251_160--Hb_132840_050 Hb_004129_170--Hb_002374_480 Hb_004129_170--Hb_153106_010 Hb_004129_170--Hb_180007_010 Hb_004129_170--Hb_003747_090 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_000012_370 Hb_000012_370 Hb_008748_050--Hb_000012_370 Hb_002785_040--Hb_003747_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_013405_110 Hb_002890_170 Hb_002890_170 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020 Hb_005375_090--Hb_013405_110 Hb_005375_090--Hb_002890_170 Hb_005375_090--Hb_004129_170 Hb_005375_090--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 199.22 8099.72 3017.91 0 0.99703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7138 5.32531 0 4.90718 20603.9

CAGE analysis