Hb_000111_460

Information

Type -
Description -
Location Contig111: 404689-408055
Sequence    

Annotation

kegg
ID rcu:RCOM_0621010
description hypothetical protein
nr
ID XP_012068724.1
description PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24567 PE=4 SV=1
Gene Ontology
ID GO:0009535
description proline-rich family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03428: 404777-408009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_460 0.0 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
2 Hb_003090_050 0.0436191033 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
3 Hb_008748_050 0.0503963016 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
4 Hb_001287_070 0.0527089014 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
5 Hb_000841_040 0.0533134796 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_005000_120 0.0562681637 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
7 Hb_011381_120 0.0563584709 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
8 Hb_011344_030 0.066834741 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_000039_210 0.0673918755 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
10 Hb_000923_030 0.0681538644 - - F-box family protein [Populus trichocarpa]
11 Hb_002818_130 0.070064986 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001046_060 0.0719358518 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
13 Hb_011068_010 0.0732141636 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_023344_040 0.0733325734 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009093_020 0.0735667009 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
16 Hb_004631_020 0.0737574843 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_014361_120 0.0759037052 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
18 Hb_000010_380 0.0761353315 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
19 Hb_086022_020 0.0763343114 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
20 Hb_001269_480 0.0765940394 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000111_460 Hb_000111_460 Hb_003090_050 Hb_003090_050 Hb_000111_460--Hb_003090_050 Hb_008748_050 Hb_008748_050 Hb_000111_460--Hb_008748_050 Hb_001287_070 Hb_001287_070 Hb_000111_460--Hb_001287_070 Hb_000841_040 Hb_000841_040 Hb_000111_460--Hb_000841_040 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120 Hb_003090_050--Hb_000841_040 Hb_000923_030 Hb_000923_030 Hb_003090_050--Hb_000923_030 Hb_003090_050--Hb_001287_070 Hb_003090_050--Hb_008748_050 Hb_000010_380 Hb_000010_380 Hb_003090_050--Hb_000010_380 Hb_086022_020 Hb_086022_020 Hb_008748_050--Hb_086022_020 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_008748_050--Hb_000923_030 Hb_000012_370 Hb_000012_370 Hb_008748_050--Hb_000012_370 Hb_011068_010 Hb_011068_010 Hb_001287_070--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_001287_070--Hb_001046_060 Hb_001287_070--Hb_005000_120 Hb_000805_080 Hb_000805_080 Hb_001287_070--Hb_000805_080 Hb_001287_070--Hb_000010_380 Hb_009093_020 Hb_009093_020 Hb_000841_040--Hb_009093_020 Hb_000841_040--Hb_011381_120 Hb_001832_180 Hb_001832_180 Hb_000841_040--Hb_001832_180 Hb_004631_020 Hb_004631_020 Hb_000841_040--Hb_004631_020 Hb_005000_120--Hb_001046_060 Hb_001621_090 Hb_001621_090 Hb_005000_120--Hb_001621_090 Hb_005000_120--Hb_011068_010 Hb_000039_210 Hb_000039_210 Hb_005000_120--Hb_000039_210 Hb_011381_120--Hb_009093_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_011381_120--Hb_003090_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0399803 4.72 51.7421 16.8339 0.018733 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.320054 0.0359629 0.0665388 0.505219 152.786

CAGE analysis