Hb_000010_380

Information

Type -
Description -
Location Contig10: 401573-409991
Sequence    

Annotation

kegg
ID cic:CICLE_v10020897mg
description hypothetical protein
nr
ID XP_006440004.1
description hypothetical protein CICLE_v10020897mg [Citrus clementina]
swissprot
ID Q94K71
description Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420 OS=Arabidopsis thaliana GN=At3g48420 PE=1 SV=1
trembl
ID V4VKK9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020897mg PE=4 SV=1
Gene Ontology
ID GO:0044434
description haloacid dehalogenase-like hydrolase domain-containing protein at3g48420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00181: 402917-410012 , PASA_asmbl_00182: 405546-409253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_380 0.0 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
2 Hb_000805_080 0.0342551743 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
3 Hb_001046_060 0.0410394958 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
4 Hb_001287_070 0.0462580027 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
5 Hb_032631_060 0.0488152334 - - Myosin heavy chain, putative [Ricinus communis]
6 Hb_011068_010 0.0532193979 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
7 Hb_003337_080 0.0541452791 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
8 Hb_003090_050 0.0551139784 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
9 Hb_001104_080 0.056940524 - - peroxiredoxin, putative [Ricinus communis]
10 Hb_000923_030 0.0574945231 - - F-box family protein [Populus trichocarpa]
11 Hb_005605_020 0.0636996957 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
12 Hb_001832_180 0.0650404337 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
13 Hb_005000_120 0.0655662908 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
14 Hb_107748_010 0.0665989382 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_000640_090 0.0713673494 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_008748_050 0.0727444864 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
17 Hb_000825_010 0.073081346 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
18 Hb_000039_210 0.0733435404 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
19 Hb_000841_040 0.0747079811 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
20 Hb_000111_460 0.0761353315 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_380 Hb_000010_380 Hb_000805_080 Hb_000805_080 Hb_000010_380--Hb_000805_080 Hb_001046_060 Hb_001046_060 Hb_000010_380--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_000010_380--Hb_001287_070 Hb_032631_060 Hb_032631_060 Hb_000010_380--Hb_032631_060 Hb_011068_010 Hb_011068_010 Hb_000010_380--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_000010_380--Hb_003337_080 Hb_000805_080--Hb_001046_060 Hb_000805_080--Hb_003337_080 Hb_000805_080--Hb_011068_010 Hb_005605_020 Hb_005605_020 Hb_000805_080--Hb_005605_020 Hb_000805_080--Hb_001287_070 Hb_001046_060--Hb_005605_020 Hb_001046_060--Hb_011068_010 Hb_001046_060--Hb_001287_070 Hb_107748_010 Hb_107748_010 Hb_001046_060--Hb_107748_010 Hb_001046_060--Hb_003337_080 Hb_001287_070--Hb_011068_010 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_003090_050 Hb_003090_050 Hb_001287_070--Hb_003090_050 Hb_001104_080 Hb_001104_080 Hb_032631_060--Hb_001104_080 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_032631_060--Hb_000805_080 Hb_000923_030 Hb_000923_030 Hb_032631_060--Hb_000923_030 Hb_003653_030 Hb_003653_030 Hb_032631_060--Hb_003653_030 Hb_011068_010--Hb_003337_080 Hb_011068_010--Hb_005605_020 Hb_011068_010--Hb_005000_120 Hb_003337_080--Hb_005605_020 Hb_000640_090 Hb_000640_090 Hb_003337_080--Hb_000640_090 Hb_003337_080--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08269 29.9883 5.49603 0 0.0313988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061564 0.193648 0 0.351909 84.4251

CAGE analysis