Hb_002592_040

Information

Type -
Description -
Location Contig2592: 75573-77020
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15710g
description POPTRDRAFT_573016; 1-aminocyclopropane-1-carboxylate oxidase family protein
nr
ID CAN85571.1
description ACC oxidase 3 [Hevea brasiliensis]
swissprot
ID Q9MB94
description 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1
trembl
ID A5I8L6
description ACC oxidase 3 OS=Hevea brasiliensis GN=aco3 PE=2 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26888: 75388-77027
cDNA
(Sanger)
(ID:Location)		 025_K05.ab1: 75885-77027 , 040_D07.ab1: 75831-77027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002592_040 0.0 - - ACC oxidase 3 [Hevea brasiliensis]
2 Hb_000948_240 0.0484737396 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013405_110 0.0550204062 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_005375_090 0.0584871931 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_001006_160 0.0596223991 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001862_040 0.0596544229 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
7 Hb_003747_090 0.0631924569 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_003032_080 0.0681892763 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027380_080 0.0684698288 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
10 Hb_003020_120 0.0697398672 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
11 Hb_082402_020 0.0705822278 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
12 Hb_004048_080 0.0706219368 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
13 Hb_001710_010 0.0709374419 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
14 Hb_000083_180 0.0711059776 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
15 Hb_002785_040 0.0715828814 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
16 Hb_000703_340 0.0728679139 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
17 Hb_003038_060 0.0749169051 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
18 Hb_163566_020 0.075187555 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_002400_200 0.076105619 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_002890_170 0.076357515 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_002592_040 Hb_002592_040 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_013405_110 Hb_013405_110 Hb_002592_040--Hb_013405_110 Hb_005375_090 Hb_005375_090 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_003747_090 Hb_003747_090 Hb_002592_040--Hb_003747_090 Hb_000948_240--Hb_001862_040 Hb_000948_240--Hb_005375_090 Hb_000948_240--Hb_003747_090 Hb_000334_290 Hb_000334_290 Hb_000948_240--Hb_000334_290 Hb_000948_240--Hb_013405_110 Hb_013405_110--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_013405_110--Hb_002785_040 Hb_013405_110--Hb_005375_090 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_005375_090--Hb_003747_090 Hb_005375_090--Hb_002785_040 Hb_002890_170 Hb_002890_170 Hb_005375_090--Hb_002890_170 Hb_004129_170 Hb_004129_170 Hb_005375_090--Hb_004129_170 Hb_082402_020 Hb_082402_020 Hb_005375_090--Hb_082402_020 Hb_005276_080 Hb_005276_080 Hb_001006_160--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_001006_160--Hb_006665_020 Hb_001006_160--Hb_002785_040 Hb_001006_160--Hb_003747_090 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180 Hb_003032_080 Hb_003032_080 Hb_001862_040--Hb_003032_080 Hb_001862_040--Hb_082402_020 Hb_001862_040--Hb_002890_170 Hb_002014_150 Hb_002014_150 Hb_001862_040--Hb_002014_150 Hb_003050_380 Hb_003050_380 Hb_001862_040--Hb_003050_380 Hb_003747_090--Hb_002785_040 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.999578 339.424 105.869 0.138166 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78919 0.974279 0 3.27349 573.39

CAGE analysis