Hb_005276_080

Information

Type -
Description -
Location Contig5276: 72324-74033
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23110g
description POPTRDRAFT_205442; hypothetical protein
nr
ID XP_012092246.1
description PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
swissprot
ID Q9LYA9
description Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
trembl
ID A0A067JC87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21932 PE=4 SV=1
Gene Ontology
ID GO:0005840
description chloroplast stem-loop binding protein of 41 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47089: 72146-74077
cDNA
(Sanger)
(ID:Location)		 007_L24.ab1: 73026-74077 , 032_J03.ab1: 73026-74066 , 050_G08.ab1: 73033-74065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_080 0.0 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
2 Hb_001006_160 0.0363835137 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_006665_020 0.0500516252 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_000531_100 0.0552563451 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
5 Hb_000450_050 0.058748385 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
6 Hb_000589_340 0.0618022899 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_000676_320 0.0623088798 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
8 Hb_000083_180 0.0623455224 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_117807_020 0.0624858822 - - methyltransferase, putative [Ricinus communis]
10 Hb_009193_020 0.0635132001 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
11 Hb_001621_090 0.0642967586 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
12 Hb_002785_040 0.0658685791 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
13 Hb_003038_060 0.068248969 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
14 Hb_000230_420 0.0705703976 - - GS [Hevea brasiliensis subsp. brasiliensis]
15 Hb_001751_050 0.0725096099 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
16 Hb_003747_090 0.073800964 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001717_060 0.0739753182 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
18 Hb_013726_060 0.0752955729 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
19 Hb_002093_020 0.0761997684 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
20 Hb_002592_040 0.0765700644 - - ACC oxidase 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005276_080 Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_000450_050 Hb_000450_050 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320 Hb_001006_160--Hb_006665_020 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180 Hb_001621_090 Hb_001621_090 Hb_006665_020--Hb_001621_090 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_013726_060 Hb_013726_060 Hb_000531_100--Hb_013726_060 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_000450_050--Hb_000589_340 Hb_000450_050--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_000450_050--Hb_005000_120 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_000139_310 Hb_000139_310 Hb_000589_340--Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000589_340--Hb_001416_130 Hb_006570_030 Hb_006570_030 Hb_000589_340--Hb_006570_030 Hb_000589_340--Hb_002785_040 Hb_000676_320--Hb_000083_180 Hb_009193_020 Hb_009193_020 Hb_000676_320--Hb_009193_020 Hb_000676_320--Hb_001006_160 Hb_000676_320--Hb_000450_050 Hb_003020_120 Hb_003020_120 Hb_000676_320--Hb_003020_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0341133 2.70786 81.3052 18.4027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116819 0.122525 0.114162 0.576358 132.233

CAGE analysis