Hb_001322_120

Information

Type -
Description -
Location Contig1322: 110683-111219
Sequence    

Annotation

kegg
ID rcu:RCOM_0192730
description nutrient reservoir, putative
nr
ID XP_002531786.1
description nutrient reservoir, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0L7
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0192730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 017_L06.ab1: 110553-111282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_120 0.0 - - nutrient reservoir, putative [Ricinus communis]
2 Hb_001292_030 0.0407435117 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
3 Hb_002785_030 0.0419751187 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
4 Hb_006570_030 0.0439215298 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_002529_120 0.0446279526 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
6 Hb_001006_040 0.0478491187 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
7 Hb_001766_160 0.0485407637 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
8 Hb_000531_100 0.051678496 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
9 Hb_000139_310 0.0574917066 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
10 Hb_001028_040 0.0578669328 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
11 Hb_000088_230 0.0579424779 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
12 Hb_002871_180 0.0592051369 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
13 Hb_007477_060 0.0603661205 - - unknown [Medicago truncatula]
14 Hb_002368_060 0.0612417457 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005329_010 0.0624130066 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
16 Hb_005649_060 0.0661082228 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
17 Hb_013726_060 0.0696516845 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
18 Hb_000230_420 0.0696611571 - - GS [Hevea brasiliensis subsp. brasiliensis]
19 Hb_000101_330 0.0700635472 - - -
20 Hb_000589_340 0.0703440981 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_001322_120 Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_006570_030 Hb_006570_030 Hb_001322_120--Hb_006570_030 Hb_002529_120 Hb_002529_120 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_001292_030--Hb_001006_040 Hb_001292_030--Hb_002785_030 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001292_030--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_002785_030--Hb_001006_040 Hb_002785_030--Hb_002529_120 Hb_001028_040 Hb_001028_040 Hb_002785_030--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_002785_030--Hb_002368_060 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_000531_100 Hb_000531_100 Hb_002529_120--Hb_000531_100 Hb_002529_120--Hb_001292_030 Hb_013726_060 Hb_013726_060 Hb_002529_120--Hb_013726_060 Hb_002529_120--Hb_001006_040 Hb_001006_040--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001006_040--Hb_001028_040 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0654179 19.4625 197.313 61.7655 0.206705 0.0863771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.893499 283.838

CAGE analysis