Hb_002871_180

Information

Type -
Description -
Location Contig2871: 296515-298878
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42970g
description Photosystem II 10 kDa polypeptide family protein
nr
ID NP_001295724.1
description photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
swissprot
ID Q40519
description Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
trembl
ID D6BRD6
description Chloroplast photosystem II 10 kDa polypeptide OS=Jatropha curcas GN=JCGZ_26561 PE=2 SV=1
Gene Ontology
ID GO:0009535
description photosystem ii 10 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29957: 296576-298903 , PASA_asmbl_29959: 296576-297417
cDNA
(Sanger)
(ID:Location)		 005_A08.ab1: 296675-298903 , 005_K17.ab1: 296712-298880 , 006_E06.ab1: 296698-298903 , 009_C16.ab1: 296655-298880 , 014_C12.ab1: 296641-298876 , 018_M13.ab1: 296807-298897 , 018_P15.ab1: 296653-298897 , 019_O23.ab1: 296637-298885 , 020_A24.ab1: 296636-298876 , 020_I18.ab1: 296637-298885 , 023_D02.ab1: 296704-298903 , 023_O13.ab1: 296656-298897 , 025_A14.ab1: 296675-298903 , 028_F04.ab1: 296672-298906 , 030_G18.ab1: 296704-298906 , 030_H02.ab1: 296708-298876 , 033_B17.ab1: 296633-298897 , 034_O04.ab1: 296655-298880 , 036_I10.ab1: 296663-296891 , 037_C15.ab1: 296655-298903 , 043_F16.ab1: 296849-298864 , 043_J24.ab1: 296628-298884 , 043_M12.ab1: 296641-298876 , 043_P19.ab1: 296617-298870 , 044_I20.ab1: 296617-298870 , 046_B04.ab1: 296704-298906 , 050_F14.ab1: 296640-298882 , 051_D04.ab1: 296708-298897

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_180 0.0 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
2 Hb_007477_060 0.0422241982 - - unknown [Medicago truncatula]
3 Hb_005649_060 0.04706537 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
4 Hb_006570_030 0.0548322379 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_001766_160 0.0554996358 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
6 Hb_001322_120 0.0592051369 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_000101_330 0.0651028012 - - -
8 Hb_000139_310 0.065915021 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
9 Hb_000088_230 0.0662518109 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
10 Hb_001416_130 0.0699806889 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003536_020 0.0725146536 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
12 Hb_005329_010 0.0731561391 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
13 Hb_000445_270 0.0742992694 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000307_150 0.0746574642 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
15 Hb_002368_060 0.0750458854 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001892_080 0.0765923571 - - Clavata3/esr-related 16, putative [Theobroma cacao]
17 Hb_080922_010 0.0769688609 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000589_340 0.0790426375 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_001028_040 0.0796772181 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
20 Hb_000460_040 0.0812178792 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_180 Hb_002871_180 Hb_007477_060 Hb_007477_060 Hb_002871_180--Hb_007477_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_006570_030 Hb_006570_030 Hb_002871_180--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_002871_180--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_002871_180--Hb_001322_120 Hb_000101_330 Hb_000101_330 Hb_002871_180--Hb_000101_330 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_006570_030 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_007477_060--Hb_001322_120 Hb_005649_060--Hb_001766_160 Hb_000115_020 Hb_000115_020 Hb_005649_060--Hb_000115_020 Hb_004712_220 Hb_004712_220 Hb_005649_060--Hb_004712_220 Hb_000445_270 Hb_000445_270 Hb_005649_060--Hb_000445_270 Hb_001006_150 Hb_001006_150 Hb_005649_060--Hb_001006_150 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_002368_060 Hb_002368_060 Hb_006570_030--Hb_002368_060 Hb_001028_040 Hb_001028_040 Hb_006570_030--Hb_001028_040 Hb_006570_030--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_001766_160--Hb_001322_120 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_001766_160--Hb_001006_150 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_002529_120 Hb_002529_120 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_000101_330--Hb_002368_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20005 379.825 2644.36 643.467 0.60872 0.547938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17006 1.68091 4.06307 30.5024 4095.49

CAGE analysis