Hb_003536_020

Information

Type -
Description -
Location Contig3536: 28225-32895
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30930g
description C2 domain-containing family protein
nr
ID XP_012065486.1
description PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22123 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36681: 28900-29189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003536_020 0.0 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
2 Hb_080922_010 0.0491461876 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_007477_060 0.0533744719 - - unknown [Medicago truncatula]
4 Hb_000101_330 0.0639932196 - - -
5 Hb_001699_140 0.0708691053 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
6 Hb_002871_180 0.0725146536 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
7 Hb_000116_090 0.0792696716 - - catalase [Hevea brasiliensis]
8 Hb_005305_070 0.085784497 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
9 Hb_087599_010 0.0868686777 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
10 Hb_000694_080 0.0876153205 - - phosphoribulose kinase, putative [Ricinus communis]
11 Hb_005649_060 0.0908397637 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
12 Hb_001766_160 0.0912001836 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
13 Hb_000017_210 0.0913800797 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
14 Hb_002093_020 0.0921558272 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
15 Hb_000445_270 0.0936431989 - - ATP binding protein, putative [Ricinus communis]
16 Hb_006570_030 0.0957015022 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
17 Hb_005329_010 0.0969627839 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
18 Hb_000270_090 0.0973122094 - - nitrate transporter, putative [Ricinus communis]
19 Hb_000482_030 0.0981094983 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
20 Hb_000483_440 0.0994659145 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003536_020 Hb_003536_020 Hb_080922_010 Hb_080922_010 Hb_003536_020--Hb_080922_010 Hb_007477_060 Hb_007477_060 Hb_003536_020--Hb_007477_060 Hb_000101_330 Hb_000101_330 Hb_003536_020--Hb_000101_330 Hb_001699_140 Hb_001699_140 Hb_003536_020--Hb_001699_140 Hb_002871_180 Hb_002871_180 Hb_003536_020--Hb_002871_180 Hb_000116_090 Hb_000116_090 Hb_003536_020--Hb_000116_090 Hb_000445_270 Hb_000445_270 Hb_080922_010--Hb_000445_270 Hb_080922_010--Hb_007477_060 Hb_080922_010--Hb_002871_180 Hb_000705_010 Hb_000705_010 Hb_080922_010--Hb_000705_010 Hb_005329_010 Hb_005329_010 Hb_080922_010--Hb_005329_010 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_002871_180 Hb_006570_030 Hb_006570_030 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000307_150 Hb_000307_150 Hb_000116_090--Hb_000307_150 Hb_000116_090--Hb_001699_140 Hb_000116_090--Hb_007477_060 Hb_000116_090--Hb_002871_180 Hb_000116_090--Hb_000101_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.456406 2.6379 0.729369 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162437 4.55608

CAGE analysis