Hb_005305_070

Information

Type -
Description -
Location Contig5305: 40512-42495
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26540g
description POPTRDRAFT_172929; hypothetical protein
nr
ID XP_002298402.2
description hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GF05
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2
Gene Ontology
ID GO:0009570
description chaperonin-like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47335: 40567-42519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_070 0.0 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
2 Hb_001699_140 0.064262136 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
3 Hb_007904_110 0.0726884215 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
4 Hb_000017_210 0.0789097246 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
5 Hb_000906_080 0.0805808321 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000483_440 0.0809405042 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000482_180 0.0854270852 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
8 Hb_003536_020 0.085784497 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_002701_250 0.0858099815 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_000101_330 0.0885363028 - - -
11 Hb_000081_110 0.0887018073 - - nitrate transporter, putative [Ricinus communis]
12 Hb_000027_110 0.0898070325 - - wall-associated kinase, putative [Ricinus communis]
13 Hb_004979_070 0.0901466736 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
14 Hb_096224_050 0.0908695839 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
15 Hb_000116_090 0.0922300816 - - catalase [Hevea brasiliensis]
16 Hb_005054_120 0.0936644332 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
17 Hb_000694_080 0.0948268514 - - phosphoribulose kinase, putative [Ricinus communis]
18 Hb_007477_060 0.0949876754 - - unknown [Medicago truncatula]
19 Hb_001564_120 0.0985819238 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
20 Hb_119600_030 0.1000986671 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_070 Hb_005305_070 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_000101_330 Hb_000101_330 Hb_001699_140--Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_001699_140--Hb_007477_060 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_004979_070 Hb_004979_070 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_004979_080 Hb_004979_080 Hb_007904_110--Hb_004979_080 Hb_000017_210--Hb_000483_440 Hb_000694_080 Hb_000694_080 Hb_000017_210--Hb_000694_080 Hb_007426_070 Hb_007426_070 Hb_000017_210--Hb_007426_070 Hb_000482_030 Hb_000482_030 Hb_000017_210--Hb_000482_030 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_001564_120 Hb_001564_120 Hb_000906_080--Hb_001564_120 Hb_000099_120 Hb_000099_120 Hb_000906_080--Hb_000099_120 Hb_005063_030 Hb_005063_030 Hb_000906_080--Hb_005063_030 Hb_000906_080--Hb_005054_120 Hb_000098_040 Hb_000098_040 Hb_000906_080--Hb_000098_040 Hb_000483_440--Hb_007426_070 Hb_000483_440--Hb_000694_080 Hb_000081_110 Hb_000081_110 Hb_000483_440--Hb_000081_110 Hb_000483_440--Hb_004146_030 Hb_005111_040 Hb_005111_040 Hb_000482_180--Hb_005111_040 Hb_048755_030 Hb_048755_030 Hb_000482_180--Hb_048755_030 Hb_002701_250 Hb_002701_250 Hb_000482_180--Hb_002701_250 Hb_000482_180--Hb_007904_110 Hb_006291_050 Hb_006291_050 Hb_000482_180--Hb_006291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189594 25.5888 96.2013 46.7621 0 0.0201679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.866717 0.579483 0 8.87148 224.748

CAGE analysis