Hb_000017_210

Information

Type -
Description -
Location Contig17: 261666-265876
Sequence    

Annotation

kegg
ID rcu:RCOM_1687910
description bel1 homeotic protein, putative
nr
ID XP_011029331.1
description PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
swissprot
ID Q38897
description Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2
trembl
ID B9RCF9
description Bel1 homeotic protein, putative OS=Ricinus communis GN=RCOM_1687910 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein bel1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15833: 261818-264310 , PASA_asmbl_15834: 263211-263415 , PASA_asmbl_15835: 265061-265248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_210 0.0 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
2 Hb_000483_440 0.0408143377 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000694_080 0.0429685653 - - phosphoribulose kinase, putative [Ricinus communis]
4 Hb_007426_070 0.0464919195 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
5 Hb_000482_030 0.06419911 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
6 Hb_004146_030 0.0742915657 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_005305_070 0.0789097246 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
8 Hb_087599_010 0.0824211251 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
9 Hb_000081_110 0.0843872429 - - nitrate transporter, putative [Ricinus communis]
10 Hb_003536_020 0.0913800797 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
11 Hb_002333_040 0.0934631112 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
12 Hb_000482_180 0.0958497964 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
13 Hb_000101_330 0.1030499631 - - -
14 Hb_001517_060 0.1031714415 - - phosphoribulose kinase, putative [Ricinus communis]
15 Hb_001579_050 0.10498368 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_026437_020 0.1081856464 - - ring finger protein, putative [Ricinus communis]
17 Hb_009093_020 0.1084728239 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
18 Hb_000545_180 0.1085818698 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
19 Hb_000026_060 0.1086599915 - - beta-1,3-glucanase [Manihot esculenta]
20 Hb_000841_040 0.1088129813 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_210 Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_000017_210--Hb_000483_440 Hb_000694_080 Hb_000694_080 Hb_000017_210--Hb_000694_080 Hb_007426_070 Hb_007426_070 Hb_000017_210--Hb_007426_070 Hb_000482_030 Hb_000482_030 Hb_000017_210--Hb_000482_030 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_000483_440--Hb_007426_070 Hb_000483_440--Hb_000694_080 Hb_000081_110 Hb_000081_110 Hb_000483_440--Hb_000081_110 Hb_000483_440--Hb_004146_030 Hb_000483_440--Hb_005305_070 Hb_000694_080--Hb_000482_030 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000694_080--Hb_007426_070 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_007426_070--Hb_004146_030 Hb_007426_070--Hb_000482_030 Hb_007426_070--Hb_000081_110 Hb_000841_040 Hb_000841_040 Hb_000482_030--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_000482_030--Hb_000111_460 Hb_008748_050 Hb_008748_050 Hb_000482_030--Hb_008748_050 Hb_000026_060 Hb_000026_060 Hb_004146_030--Hb_000026_060 Hb_000858_050 Hb_000858_050 Hb_004146_030--Hb_000858_050 Hb_001579_050 Hb_001579_050 Hb_004146_030--Hb_001579_050 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35771 8.9157 3.40813 0.0066955 0.0186589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0455147 0 0 1.08464 23.0853

CAGE analysis