Hb_000026_060

Information

Type -
Description -
Location Contig26: 115489-116595
Sequence    

Annotation

kegg
ID cit:102613523
description glucan endo-1,3-beta-glucosidase-like
nr
ID ABK58141.1
description beta-1,3-glucanase [Manihot esculenta]
swissprot
ID P52400
description Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1
trembl
ID A0SVL9
description Beta-1,3-glucanase (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta- basic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000026_060 0.0 - - beta-1,3-glucanase [Manihot esculenta]
2 Hb_080791_010 0.0449856245 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
3 Hb_004146_030 0.0621521593 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000858_050 0.0845620042 - - kinase, putative [Ricinus communis]
5 Hb_003171_040 0.0891741278 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_015817_010 0.0955606625 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
7 Hb_007426_070 0.0965227487 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
8 Hb_006147_020 0.0993865336 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002041_020 0.099721566 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_000841_040 0.1029411919 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
11 Hb_000694_080 0.1047597999 - - phosphoribulose kinase, putative [Ricinus communis]
12 Hb_001289_050 0.1049568936 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
13 Hb_004459_050 0.1069525657 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004242_200 0.1071213416 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
15 Hb_000482_030 0.107962388 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
16 Hb_000017_210 0.1086599915 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
17 Hb_001579_050 0.110423879 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_015807_020 0.1107856915 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_010381_080 0.1122193578 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000282_100 0.1125844307 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000026_060 Hb_000026_060 Hb_080791_010 Hb_080791_010 Hb_000026_060--Hb_080791_010 Hb_004146_030 Hb_004146_030 Hb_000026_060--Hb_004146_030 Hb_000858_050 Hb_000858_050 Hb_000026_060--Hb_000858_050 Hb_003171_040 Hb_003171_040 Hb_000026_060--Hb_003171_040 Hb_015817_010 Hb_015817_010 Hb_000026_060--Hb_015817_010 Hb_007426_070 Hb_007426_070 Hb_000026_060--Hb_007426_070 Hb_080791_010--Hb_015817_010 Hb_006147_020 Hb_006147_020 Hb_080791_010--Hb_006147_020 Hb_002041_020 Hb_002041_020 Hb_080791_010--Hb_002041_020 Hb_043935_010 Hb_043935_010 Hb_080791_010--Hb_043935_010 Hb_080791_010--Hb_000858_050 Hb_004146_030--Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_004146_030--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_004146_030--Hb_000483_440 Hb_004146_030--Hb_000858_050 Hb_001579_050 Hb_001579_050 Hb_004146_030--Hb_001579_050 Hb_015807_020 Hb_015807_020 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_005029_030 Hb_005029_030 Hb_000858_050--Hb_005029_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050 Hb_003171_040--Hb_004146_030 Hb_123689_010 Hb_123689_010 Hb_003171_040--Hb_123689_010 Hb_003171_040--Hb_001579_050 Hb_004242_200 Hb_004242_200 Hb_003171_040--Hb_004242_200 Hb_001691_180 Hb_001691_180 Hb_003171_040--Hb_001691_180 Hb_015817_010--Hb_043935_010 Hb_015817_010--Hb_006147_020 Hb_015817_010--Hb_005029_030 Hb_004459_050 Hb_004459_050 Hb_015817_010--Hb_004459_050 Hb_007426_070--Hb_000017_210 Hb_007426_070--Hb_000483_440 Hb_000694_080 Hb_000694_080 Hb_007426_070--Hb_000694_080 Hb_000482_030 Hb_000482_030 Hb_007426_070--Hb_000482_030 Hb_000081_110 Hb_000081_110 Hb_007426_070--Hb_000081_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.334746 7.61629 2.19214 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.54382 24.4621

CAGE analysis