Hb_000483_440

Information

Type -
Description -
Location Contig483: 380496-386012
Sequence    

Annotation

kegg
ID rcu:RCOM_0192620
description hypothetical protein
nr
ID XP_002531785.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0L6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44842: 380345-381312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_440 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000017_210 0.0408143377 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
3 Hb_007426_070 0.0543005576 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
4 Hb_000694_080 0.0680858125 - - phosphoribulose kinase, putative [Ricinus communis]
5 Hb_000081_110 0.0762542943 - - nitrate transporter, putative [Ricinus communis]
6 Hb_004146_030 0.0774857721 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_005305_070 0.0809405042 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
8 Hb_000482_030 0.082401989 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
9 Hb_000482_180 0.089520379 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
10 Hb_003536_020 0.0994659145 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
11 Hb_001579_050 0.099867474 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000011_440 0.1016923708 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
13 Hb_087599_010 0.1051338788 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
14 Hb_048755_030 0.1073091889 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_001691_170 0.1082022157 - - PREDICTED: callose synthase 12-like [Glycine max]
16 Hb_001517_060 0.1082820269 - - phosphoribulose kinase, putative [Ricinus communis]
17 Hb_002333_040 0.1102019977 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
18 Hb_002943_020 0.1114796034 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
19 Hb_002701_250 0.1116997068 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_000026_060 0.1133331703 - - beta-1,3-glucanase [Manihot esculenta]

Gene co-expression network

sample Hb_000483_440 Hb_000483_440 Hb_000017_210 Hb_000017_210 Hb_000483_440--Hb_000017_210 Hb_007426_070 Hb_007426_070 Hb_000483_440--Hb_007426_070 Hb_000694_080 Hb_000694_080 Hb_000483_440--Hb_000694_080 Hb_000081_110 Hb_000081_110 Hb_000483_440--Hb_000081_110 Hb_004146_030 Hb_004146_030 Hb_000483_440--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000483_440--Hb_005305_070 Hb_000017_210--Hb_000694_080 Hb_000017_210--Hb_007426_070 Hb_000482_030 Hb_000482_030 Hb_000017_210--Hb_000482_030 Hb_000017_210--Hb_004146_030 Hb_000017_210--Hb_005305_070 Hb_007426_070--Hb_004146_030 Hb_007426_070--Hb_000694_080 Hb_007426_070--Hb_000482_030 Hb_007426_070--Hb_000081_110 Hb_000694_080--Hb_000482_030 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_000139_030 Hb_000139_030 Hb_000081_110--Hb_000139_030 Hb_001579_050 Hb_001579_050 Hb_000081_110--Hb_001579_050 Hb_000081_110--Hb_000017_210 Hb_000026_060 Hb_000026_060 Hb_004146_030--Hb_000026_060 Hb_000858_050 Hb_000858_050 Hb_004146_030--Hb_000858_050 Hb_004146_030--Hb_001579_050 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0729155 20.1384 101.199 42.6487 0.0487816 0.0214346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 16.781 280.887

CAGE analysis