Hb_000139_030

Information

Type -
Description -
Location Contig139: 19054-39623
Sequence    

Annotation

kegg
ID sly:101254423
description uncharacterized LOC101254423
nr
ID XP_010326653.1
description PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
swissprot
ID Q43077
description Primary amine oxidase OS=Pisum sativum PE=1 SV=1
trembl
ID A0A067JW04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22065 PE=3 SV=1
Gene Ontology
ID GO:0005507
description primary amine oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10611: 23406-27389 , PASA_asmbl_10612: 34337-34498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_030 0.0 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
2 Hb_001579_050 0.0787247899 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_000081_110 0.0832477316 - - nitrate transporter, putative [Ricinus communis]
4 Hb_057880_020 0.0838801679 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
5 Hb_000462_160 0.091002533 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_020367_040 0.0914744916 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
7 Hb_048755_030 0.0915000899 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000441_080 0.0917977935 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_002620_040 0.0925249609 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_001517_060 0.0964868146 - - phosphoribulose kinase, putative [Ricinus communis]
11 Hb_002111_010 0.0983379612 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_163950_040 0.1011197272 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
13 Hb_001295_080 0.1055531966 - - Protein KES1, putative [Ricinus communis]
14 Hb_168319_040 0.1058385007 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
15 Hb_077151_010 0.1074311976 - - ankyrin repeat protein [Bruguiera gymnorhiza]
16 Hb_011537_130 0.1121486503 - - unnamed protein product [Vitis vinifera]
17 Hb_002289_070 0.1123576077 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
18 Hb_010021_040 0.1137588706 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
19 Hb_002534_090 0.1138455858 - - geranylgeranyl reductase [Hevea brasiliensis]
20 Hb_010080_070 0.1146288463 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000139_030 Hb_000139_030 Hb_001579_050 Hb_001579_050 Hb_000139_030--Hb_001579_050 Hb_000081_110 Hb_000081_110 Hb_000139_030--Hb_000081_110 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_048755_030 Hb_048755_030 Hb_000139_030--Hb_048755_030 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_000483_440 Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210 Hb_057880_020--Hb_000462_160 Hb_057880_020--Hb_020367_040 Hb_002620_040 Hb_002620_040 Hb_057880_020--Hb_002620_040 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_000462_160--Hb_002620_040 Hb_000462_160--Hb_020367_040 Hb_000462_160--Hb_048755_030 Hb_002226_090 Hb_002226_090 Hb_000462_160--Hb_002226_090 Hb_020367_040--Hb_002226_090 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_020367_040--Hb_007904_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_000482_180 Hb_000482_180 Hb_048755_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_048755_030--Hb_011537_130 Hb_048755_030--Hb_001579_050 Hb_002111_010 Hb_002111_010 Hb_048755_030--Hb_002111_010 Hb_048755_030--Hb_020367_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.239156 0.483944 0.445404 0 0.00325469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00844709 0 0 0.115749 3.08591

CAGE analysis