Hb_020367_040

Information

Type -
Description -
Location Contig20367: 31850-37501
Sequence    

Annotation

kegg
ID rcu:RCOM_0522740
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID KDP39304.1
description hypothetical protein JCGZ_01061 [Jatropha curcas]
swissprot
ID Q651X6
description Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1
trembl
ID A0A067L5E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01061 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20857: 33929-36859 , PASA_asmbl_20858: 36441-36565 , PASA_asmbl_20859: 36667-37021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020367_040 0.0 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
2 Hb_002226_090 0.0707951457 - - Stachyose synthase precursor, putative [Ricinus communis]
3 Hb_057880_020 0.0764399029 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
4 Hb_002701_250 0.076980433 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_007904_110 0.0840965581 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_000081_110 0.0882334636 - - nitrate transporter, putative [Ricinus communis]
7 Hb_000389_170 0.08828039 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_000462_160 0.0905668323 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000139_030 0.0914744916 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
10 Hb_048755_030 0.0935692572 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_000482_180 0.0961742611 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
12 Hb_004979_070 0.0989562099 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
13 Hb_004291_030 0.1004925258 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
14 Hb_010402_040 0.100779485 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
15 Hb_000826_010 0.1022032868 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011537_130 0.1023817044 - - unnamed protein product [Vitis vinifera]
17 Hb_002289_070 0.1065384371 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
18 Hb_002534_090 0.1102385621 - - geranylgeranyl reductase [Hevea brasiliensis]
19 Hb_002421_150 0.1122235673 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
20 Hb_119600_030 0.1127870611 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]

Gene co-expression network

sample Hb_020367_040 Hb_020367_040 Hb_002226_090 Hb_002226_090 Hb_020367_040--Hb_002226_090 Hb_057880_020 Hb_057880_020 Hb_020367_040--Hb_057880_020 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_010402_040 Hb_010402_040 Hb_002226_090--Hb_010402_040 Hb_004117_320 Hb_004117_320 Hb_002226_090--Hb_004117_320 Hb_002226_090--Hb_007904_110 Hb_004291_050 Hb_004291_050 Hb_002226_090--Hb_004291_050 Hb_004979_080 Hb_004979_080 Hb_002226_090--Hb_004979_080 Hb_000462_160 Hb_000462_160 Hb_057880_020--Hb_000462_160 Hb_002620_040 Hb_002620_040 Hb_057880_020--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_057880_020--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_000826_010 Hb_000826_010 Hb_002701_250--Hb_000826_010 Hb_002289_070 Hb_002289_070 Hb_002701_250--Hb_002289_070 Hb_000373_160 Hb_000373_160 Hb_002701_250--Hb_000373_160 Hb_000098_040 Hb_000098_040 Hb_002701_250--Hb_000098_040 Hb_000482_180 Hb_000482_180 Hb_002701_250--Hb_000482_180 Hb_004979_070 Hb_004979_070 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080 Hb_000483_440 Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000081_110--Hb_000139_030 Hb_001579_050 Hb_001579_050 Hb_000081_110--Hb_001579_050 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210 Hb_008727_060 Hb_008727_060 Hb_000389_170--Hb_008727_060 Hb_001699_110 Hb_001699_110 Hb_000389_170--Hb_001699_110 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_005288_100 Hb_005288_100 Hb_000389_170--Hb_005288_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.07735 5.35898 5.48303 0.00910489 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0619654 0.0487576 0 0.56213 24.9581

CAGE analysis