Hb_004117_320

Information

Type -
Description -
Location Contig4117: 225617-229689
Sequence    

Annotation

kegg
ID rcu:RCOM_0376600
description kinase, putative (EC:2.7.11.25)
nr
ID XP_012089695.1
description PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
swissprot
ID Q9SCU5
description Probable serine/threonine-protein kinase WNK5 OS=Arabidopsis thaliana GN=WNK5 PE=1 SV=2
trembl
ID A0A067JG21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00364 PE=4 SV=1
Gene Ontology
ID GO:0044424
description probable serine threonine-protein kinase wnk5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40786: 227741-228674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_320 0.0 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
2 Hb_010402_040 0.0683053213 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
3 Hb_005867_050 0.0729655728 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
4 Hb_002226_090 0.0761830963 - - Stachyose synthase precursor, putative [Ricinus communis]
5 Hb_022693_080 0.087690673 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
6 Hb_004979_080 0.0975939377 - - kinase, putative [Ricinus communis]
7 Hb_004291_050 0.1034777408 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
8 Hb_000061_440 0.1119478411 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_000951_070 0.1127351876 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
10 Hb_000668_180 0.1155336146 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
11 Hb_020367_040 0.1189669962 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
12 Hb_119600_030 0.11995757 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
13 Hb_066293_010 0.1250410224 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_007904_110 0.1251526742 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
15 Hb_027337_130 0.1266836371 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
16 Hb_004979_070 0.1280567377 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
17 Hb_033363_030 0.1316958158 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
18 Hb_000389_170 0.1341142001 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_004934_130 0.1351873441 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
20 Hb_057880_020 0.1358376835 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]

Gene co-expression network

sample Hb_004117_320 Hb_004117_320 Hb_010402_040 Hb_010402_040 Hb_004117_320--Hb_010402_040 Hb_005867_050 Hb_005867_050 Hb_004117_320--Hb_005867_050 Hb_002226_090 Hb_002226_090 Hb_004117_320--Hb_002226_090 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004979_080 Hb_004979_080 Hb_004117_320--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004117_320--Hb_004291_050 Hb_010402_040--Hb_002226_090 Hb_000951_070 Hb_000951_070 Hb_010402_040--Hb_000951_070 Hb_010402_040--Hb_005867_050 Hb_020367_040 Hb_020367_040 Hb_010402_040--Hb_020367_040 Hb_000668_180 Hb_000668_180 Hb_010402_040--Hb_000668_180 Hb_005867_050--Hb_022693_080 Hb_005867_050--Hb_002226_090 Hb_005867_050--Hb_004979_080 Hb_000061_440 Hb_000061_440 Hb_005867_050--Hb_000061_440 Hb_002226_090--Hb_020367_040 Hb_007904_110 Hb_007904_110 Hb_002226_090--Hb_007904_110 Hb_002226_090--Hb_004291_050 Hb_002226_090--Hb_004979_080 Hb_000270_640 Hb_000270_640 Hb_022693_080--Hb_000270_640 Hb_022693_080--Hb_004979_080 Hb_022693_080--Hb_004291_050 Hb_019863_050 Hb_019863_050 Hb_022693_080--Hb_019863_050 Hb_096224_050 Hb_096224_050 Hb_004979_080--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_004979_080--Hb_000644_010 Hb_004979_070 Hb_004979_070 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_004979_080--Hb_007904_110 Hb_004979_080--Hb_000668_180 Hb_004291_050--Hb_004979_080 Hb_004291_050--Hb_004979_070 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_004291_050--Hb_007904_110 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164226 3.93765 3.704 3.8381 0.107342 0.0504537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0370081 0.0145604 0.0831976 0.497409 16.2326

CAGE analysis