Hb_010402_040

Information

Type -
Description -
Location Contig10402: 51335-66628
Sequence    

Annotation

kegg
ID rcu:RCOM_0904920
description multidrug resistance pump, putative
nr
ID KDP20756.1
description hypothetical protein JCGZ_21227 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JAE2
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_21227 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01487: 51373-53959 , PASA_asmbl_01489: 54046-54742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010402_040 0.0 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
2 Hb_004117_320 0.0683053213 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
3 Hb_002226_090 0.0739760324 - - Stachyose synthase precursor, putative [Ricinus communis]
4 Hb_000951_070 0.0837763254 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
5 Hb_005867_050 0.0929627287 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
6 Hb_020367_040 0.100779485 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
7 Hb_000668_180 0.1012998269 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
8 Hb_004979_080 0.1044400269 - - kinase, putative [Ricinus communis]
9 Hb_057880_020 0.1150332321 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
10 Hb_004291_050 0.1163176559 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
11 Hb_022693_080 0.1206774667 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
12 Hb_003440_080 0.124482981 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_027337_130 0.1267454435 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
14 Hb_007904_110 0.1267887027 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
15 Hb_000462_160 0.1297566154 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000081_110 0.1304217819 - - nitrate transporter, putative [Ricinus communis]
17 Hb_000027_110 0.1311622668 - - wall-associated kinase, putative [Ricinus communis]
18 Hb_000139_030 0.1352956599 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
19 Hb_004979_070 0.1375402238 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
20 Hb_066293_010 0.1380083717 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_010402_040 Hb_010402_040 Hb_004117_320 Hb_004117_320 Hb_010402_040--Hb_004117_320 Hb_002226_090 Hb_002226_090 Hb_010402_040--Hb_002226_090 Hb_000951_070 Hb_000951_070 Hb_010402_040--Hb_000951_070 Hb_005867_050 Hb_005867_050 Hb_010402_040--Hb_005867_050 Hb_020367_040 Hb_020367_040 Hb_010402_040--Hb_020367_040 Hb_000668_180 Hb_000668_180 Hb_010402_040--Hb_000668_180 Hb_004117_320--Hb_005867_050 Hb_004117_320--Hb_002226_090 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004979_080 Hb_004979_080 Hb_004117_320--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004117_320--Hb_004291_050 Hb_002226_090--Hb_020367_040 Hb_007904_110 Hb_007904_110 Hb_002226_090--Hb_007904_110 Hb_002226_090--Hb_004291_050 Hb_002226_090--Hb_004979_080 Hb_000951_070--Hb_000668_180 Hb_089305_040 Hb_089305_040 Hb_000951_070--Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_000951_070--Hb_003796_010 Hb_003440_080 Hb_003440_080 Hb_000951_070--Hb_003440_080 Hb_000951_070--Hb_004117_320 Hb_005867_050--Hb_022693_080 Hb_005867_050--Hb_002226_090 Hb_005867_050--Hb_004979_080 Hb_000061_440 Hb_000061_440 Hb_005867_050--Hb_000061_440 Hb_057880_020 Hb_057880_020 Hb_020367_040--Hb_057880_020 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_033363_030 Hb_033363_030 Hb_000668_180--Hb_033363_030 Hb_000027_110 Hb_000027_110 Hb_000668_180--Hb_000027_110 Hb_000668_180--Hb_004979_080 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0555531 7.71277 7.31394 6.02024 0.181701 0.0156481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531722 0.0941473 0.120223 1.14046 36.5222

CAGE analysis