Hb_089305_040

Information

Type -
Description -
Location Contig89305: 33518-37011
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089305_040 0.0 - - -
2 Hb_003796_010 0.0638999204 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_000951_070 0.1010113311 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
4 Hb_004643_020 0.1032174063 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
5 Hb_001459_020 0.1124383829 - - ankyrin repeat protein [Bruguiera gymnorhiza]
6 Hb_009393_110 0.1316910343 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
7 Hb_004951_030 0.132476448 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_029510_060 0.1415457988 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
9 Hb_057880_020 0.1520384676 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
10 Hb_005194_050 0.1549086371 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_119832_010 0.1555958121 - - -
12 Hb_010402_040 0.1561093422 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
13 Hb_009004_010 0.1601287191 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
14 Hb_001300_090 0.1637364492 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
15 Hb_149345_010 0.1650870556 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_000389_170 0.1686997306 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
17 Hb_018105_010 0.1696453769 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
18 Hb_007718_040 0.1700890138 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
19 Hb_003440_080 0.1720855631 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_020367_040 0.1736007923 - - hypothetical protein JCGZ_01061 [Jatropha curcas]

Gene co-expression network

sample Hb_089305_040 Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_089305_040--Hb_003796_010 Hb_000951_070 Hb_000951_070 Hb_089305_040--Hb_000951_070 Hb_004643_020 Hb_004643_020 Hb_089305_040--Hb_004643_020 Hb_001459_020 Hb_001459_020 Hb_089305_040--Hb_001459_020 Hb_009393_110 Hb_009393_110 Hb_089305_040--Hb_009393_110 Hb_004951_030 Hb_004951_030 Hb_089305_040--Hb_004951_030 Hb_003796_010--Hb_004643_020 Hb_003796_010--Hb_004951_030 Hb_003796_010--Hb_009393_110 Hb_003796_010--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003796_010--Hb_119832_010 Hb_010402_040 Hb_010402_040 Hb_000951_070--Hb_010402_040 Hb_000668_180 Hb_000668_180 Hb_000951_070--Hb_000668_180 Hb_003440_080 Hb_003440_080 Hb_000951_070--Hb_003440_080 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320 Hb_004643_020--Hb_004951_030 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_004643_020--Hb_009393_110 Hb_002620_040 Hb_002620_040 Hb_001459_020--Hb_002620_040 Hb_007718_040 Hb_007718_040 Hb_001459_020--Hb_007718_040 Hb_057880_020 Hb_057880_020 Hb_001459_020--Hb_057880_020 Hb_000920_340 Hb_000920_340 Hb_001459_020--Hb_000920_340 Hb_149345_010 Hb_149345_010 Hb_001459_020--Hb_149345_010 Hb_009393_110--Hb_004951_030 Hb_008225_020 Hb_008225_020 Hb_009393_110--Hb_008225_020 Hb_009393_110--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_009393_110--Hb_000311_110 Hb_009393_110--Hb_000951_070 Hb_004951_030--Hb_119832_010 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_004951_030--Hb_008225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.168699 0.0655627 0.125178 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.761158

CAGE analysis