Hb_004951_030

Information

Type -
Description -
Location Contig4951: 28787-30610
Sequence    

Annotation

kegg
ID rcu:RCOM_0867890
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_002519944.1
description 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
swissprot
ID O49675
description Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1
trembl
ID B9S1S9
description 9-cis-epoxycarotenoid dioxygenase, putative OS=Ricinus communis GN=RCOM_0867890 PE=4 SV=1
Gene Ontology
ID GO:0051213
description probable carotenoid cleavage dioxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004951_030 0.0 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
2 Hb_003796_010 0.0821259269 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_009393_110 0.0848929782 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
4 Hb_119832_010 0.1101540752 - - -
5 Hb_004643_020 0.1182942423 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
6 Hb_018105_010 0.124274074 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
7 Hb_008225_020 0.1290453442 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
8 Hb_089305_040 0.132476448 - - -
9 Hb_000951_070 0.137122089 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
10 Hb_029510_060 0.1437485582 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
11 Hb_001300_090 0.1550823558 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
12 Hb_000311_110 0.1584828753 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000224_250 0.1716958874 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
14 Hb_010402_040 0.1751322957 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
15 Hb_002876_010 0.1752574876 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_000672_130 0.1823456487 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
17 Hb_000668_180 0.1825955996 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
18 Hb_007201_010 0.1843812314 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
19 Hb_141990_030 0.1865863088 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
20 Hb_003440_080 0.1867936207 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_004951_030 Hb_004951_030 Hb_003796_010 Hb_003796_010 Hb_004951_030--Hb_003796_010 Hb_009393_110 Hb_009393_110 Hb_004951_030--Hb_009393_110 Hb_119832_010 Hb_119832_010 Hb_004951_030--Hb_119832_010 Hb_004643_020 Hb_004643_020 Hb_004951_030--Hb_004643_020 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_008225_020 Hb_008225_020 Hb_004951_030--Hb_008225_020 Hb_089305_040 Hb_089305_040 Hb_003796_010--Hb_089305_040 Hb_003796_010--Hb_004643_020 Hb_003796_010--Hb_009393_110 Hb_000951_070 Hb_000951_070 Hb_003796_010--Hb_000951_070 Hb_003796_010--Hb_119832_010 Hb_009393_110--Hb_008225_020 Hb_009393_110--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_009393_110--Hb_000311_110 Hb_009393_110--Hb_000951_070 Hb_119832_010--Hb_000311_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_003440_080 Hb_003440_080 Hb_119832_010--Hb_003440_080 Hb_004643_020--Hb_089305_040 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_004643_020--Hb_009393_110 Hb_001999_050 Hb_001999_050 Hb_018105_010--Hb_001999_050 Hb_018105_010--Hb_000311_110 Hb_018105_010--Hb_009393_110 Hb_018105_010--Hb_119832_010 Hb_018105_010--Hb_004643_020 Hb_008225_020--Hb_119832_010 Hb_008225_020--Hb_000311_110 Hb_062503_010 Hb_062503_010 Hb_008225_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_008225_020--Hb_005183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.39161 0.882102 0.555055 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0787108 0 0.00783594 7.50554

CAGE analysis