Hb_005183_060

Information

Type -
Description -
Location Contig5183: 61548-61829
Sequence    

Annotation

kegg
ID tcc:TCM_033854
description Calcium-binding EF-hand family protein, putative
nr
ID KDP38346.1
description hypothetical protein JCGZ_04271 [Jatropha curcas]
swissprot
ID P05934
description Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1
trembl
ID A0A067KQ60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04271 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_060 0.0 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
2 Hb_062503_010 0.048801805 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_101778_010 0.0819398947 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000103_380 0.0965688543 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
5 Hb_000832_360 0.0974119607 - - -
6 Hb_007507_030 0.0976386548 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_002876_010 0.1177886546 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_147069_010 0.1205459956 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
9 Hb_137701_020 0.1279303998 - - putative protein kinase [Oryza sativa Japonica Group]
10 Hb_000224_250 0.1283527251 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
11 Hb_001105_140 0.1325235451 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
12 Hb_005736_080 0.1394762436 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_001205_050 0.1422079324 - - -
14 Hb_141990_030 0.1431387105 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
15 Hb_008225_020 0.14822295 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
16 Hb_042141_010 0.165359823 - - -
17 Hb_003058_160 0.1658080624 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004924_040 0.166124387 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_063869_010 0.1662305463 - - JHL22C18.10 [Jatropha curcas]
20 Hb_073467_010 0.1672751324 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_060 Hb_005183_060 Hb_062503_010 Hb_062503_010 Hb_005183_060--Hb_062503_010 Hb_101778_010 Hb_101778_010 Hb_005183_060--Hb_101778_010 Hb_000103_380 Hb_000103_380 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_007507_030 Hb_007507_030 Hb_005183_060--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_005183_060--Hb_002876_010 Hb_062503_010--Hb_101778_010 Hb_062503_010--Hb_007507_030 Hb_062503_010--Hb_002876_010 Hb_062503_010--Hb_000103_380 Hb_000224_250 Hb_000224_250 Hb_062503_010--Hb_000224_250 Hb_101778_010--Hb_007507_030 Hb_101778_010--Hb_000224_250 Hb_042141_010 Hb_042141_010 Hb_101778_010--Hb_042141_010 Hb_101778_010--Hb_002876_010 Hb_000103_380--Hb_000832_360 Hb_001105_140 Hb_001105_140 Hb_000103_380--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_000103_380--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000103_380--Hb_141990_030 Hb_000103_380--Hb_002876_010 Hb_003058_160 Hb_003058_160 Hb_000103_380--Hb_003058_160 Hb_147069_010 Hb_147069_010 Hb_000832_360--Hb_147069_010 Hb_000832_360--Hb_001105_140 Hb_001205_050 Hb_001205_050 Hb_000832_360--Hb_001205_050 Hb_000832_360--Hb_005736_080 Hb_000832_360--Hb_141990_030 Hb_007507_030--Hb_042141_010 Hb_007507_030--Hb_000224_250 Hb_063869_010 Hb_063869_010 Hb_007507_030--Hb_063869_010 Hb_002876_010--Hb_000224_250 Hb_002876_010--Hb_001105_140 Hb_002876_010--Hb_005736_080 Hb_002876_010--Hb_141990_030 Hb_002876_010--Hb_003058_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.898256 0.498518 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.54815

CAGE analysis